BAC Information

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BAC

Clone NameMSMg01-158E23
Chromosome10 (Build37)
Map Location 122,817,898 - 122,818,555
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158E23.T7 (MSMg01no158_e23.b1)MSMg01-158E23.TJ (MSMg01no158_e23.g1)
ACCAG358557AG358558
length712714
length of high quality
(start - end)
699 (10 - 708)652 (63 - 714)
definitionCHROMAT_FILE: MSMg01no158_e23.b1 PHD_FILE: MSMg01no158_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:49 2005CHROMAT_FILE: MSMg01no158_e23.g1 PHD_FILE: MSMg01no158_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGGCAGAGGATCCGCGGAATTCTTTGTTTA
GCTCTGAGCCCCAATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACC
ATCTTGTGTTCTCTATACATATTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGACGGTGTCT
TTTGCCTTATAGAAGCTTTGCAGTTTCATGAGGTGCCATTTGTCAATTCT
CGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCTG
TGCCAATATCTTTGAGGCTTTTCCACACTTTTTCCTCTACAAGTTTCAGT
GTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGT
ACAAGGACACAGGAATGGATCAATTCACATTCTTCTACATGATAACCACC
AGTTGTGCCAGCGCCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGATT
GTTTTAGCTCCCTTGTTGAAGATCAAGTGACCATAGGTGTGTGAGTTCAT
TTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTTGCTATACC
AGTACCATGCCGTTTTTATCACAATTGCTTTGTAGTANAGTTTTAGGTCA
GGCATGGTGATTCCACCAAAGGTTCTTTTATACTTGAGAAGAAGTTTTGC
TATCCTAGGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGCAGGAGGAATACCAGTAACTCATGTGGTGACCA
CAATCTAATGCTCCGACAGACACAAAGACATGGACAGGATCTTTGATCTT
ACAAAGCTGTGCGGTAATGCACATATATTCTGGAGCCCGGAGCCTGGAAG
GGTTGACACTGAGTAGAAACAAAGATACAGGAAAGACAAGACTGCTTGGA
GCATGGTAGAAGGGCTTATCAAGGAAAAAATAGTGGAGACCTGGTGCTAC
ACAGAAATTCTTTCTTATGAAGAGGATTAAAACATGGAAATTCCTGGATG
CCTAGTAGTGGTCCTTGACTGGTACAATCTCAACTGTCATTCATTGTATG
TGGGAGCACCATGACTTGTAACCTGAAGAAATACTTTTCAGACATGAGCA
CCACTGTGTGTTCACATACATACACAGACATGTACACACATTTACCATGT
GTTAATTCTGTCTCCTTCCCTTACCTAAAGAAGTCATACCAATGAAAAAC
ATCTAAAGTTTTTATCATAAATCTCAATTTCTGTGAATATCCACAAGGCC
AAAACCATGATTTGGATCCTGTTATAAAATGATTTCAAAACACCACAACT
TAGTAATACAATTATCTCCTTTTTGATAGCTGAAAACGACTGTGTTATAA
TCAAAGCCTCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_e23.g1 MSMg01no158_e23.g1 CHROMAT_FILE:
MSMg01no158_e23.g1 PHD_FILE: MSMg01no158_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:49 2005
         (652 letters)



>mm_chr10_122817698_122818755
          Length = 1058

 Score = 1191 bits (616), Expect = 0.0
 Identities = 645/658 (98%), Gaps = 6/658 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagcaggaggaataccagtaactcatgtggtgaccacaatctaatgctccgacagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 858 ttcagcaggaggaataccagtaactcatgtggtgaccacaatctaatgctctgacagaca 799

                                                                       
Query: 61  caaagacatggacaggatctttgatcttacaaagctgtgcggtaatgcacatatattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caaagacatggacaggatctttgatcttacaaagctgtgcggtaatgcacatatattctg 739

                                                                       
Query: 121 gagcccggagcctggaagggttgacactgagtagaaacaaagatacaggaaagacaagac 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagccctgagcctggaagggttgacactgagtagaaacaaagatacaggaaagacaagac 679

                                                                       
Query: 181 tgcttggagcatggta------gaagggcttatcaaggaaaaaatagtggagacctggtg 234
           ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcttggagcatggtaagcaatgaagggcttatcaaggaaaaaatagtggagacctggtg 619

                                                                       
Query: 235 ctacacagaaattctttcttatgaagaggattaaaacatggaaattcctggatgcctagt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctacacagaaattctttcttatgaagaggattaaaacatggaaattcctggatgcctagt 559

                                                                       
Query: 295 agtggtccttgactggtacaatctcaactgtcattcattgtatgtgggagcaccatgact 354
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 558 agtggtccttgactggtacaatctcaactgtcattcattgtatgtgggagtagcatgact 499

                                                                       
Query: 355 tgtaacctgaagaaatacttttcagacatgagcaccactgtgtgttcacatacatacaca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtaacctgaagaaatacttttcagacatgagcaccactgtgtgttcacatacatacaca 439

                                                                       
Query: 415 gacatgtacacacatttaccatgtgttaattctgtctccttcccttacctaaagaagtca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacatgtacacacatttaccatgtgttaattctgtctccttcccttacctaaagaagtca 379

                                                                       
Query: 475 taccaatgaaaaacatctaaagtttttatcataaatctcaatttctgtgaatatccacaa 534
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 taccaatgaaaaacatctaaagtttttatcttaaatctcaatttctgtgaatatccacaa 319

                                                                       
Query: 535 ggccaaaaccatgatttggatcctgttataaaatgatttcaaaacaccacaacttagtaa 594
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 ggccaaaaccatgatttggatcctgttgtaaaatgatttcaaaacaccacaacttagtaa 259

                                                                     
Query: 595 tacaattatctcctttttgatagctgaaaacgactgtgttataatcaaagcctctgaa 652
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacaattatctcctttttgagagctgaaaacgactgtgttataatcaaagcctctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1058
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1048
Effective search space:   672816
Effective search space used:   672816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)