BAC Information

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BAC

Clone NameMSMg01-158G16
Chromosome10 (Build37)
Map Location 31,054,885 - 31,055,124
singlet/doubletsinglet
Overlap geneTpd52l1
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2
Downstream geneLOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158G16.T7 (MSMg01no158_g16.b1)MSMg01-158G16.TJ (MSMg01no158_g16.g1)
ACCAG358634AG358635
length702696
length of high quality
(start - end)
316 (35 - 350)240 (64 - 303)
definitionCHROMAT_FILE: MSMg01no158_g16.b1 PHD_FILE: MSMg01no158_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:56 2005CHROMAT_FILE: MSMg01no158_g16.g1 PHD_FILE: MSMg01no158_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTAC
CATATACTGTATTTCCTACCCCACACTCAGTCCTGAGAGATCCCCTCATA
ATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTT
GCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAA
AACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTG
TGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCC
GCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATTTC
AATACGCTCTGAGCTGNTCGCCCGGCTATGGCGTAGGCCTAGTCCGTAGG
CAGCACCCCACAAAAAAAAGAAAGGTTTCTTCAATCTGCATTCGCTTCGA
ATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAG
TTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGAC
GGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGA
GCGAGATTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTTAGCAG
CCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGCAAGT
TG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTATATGAGCCATCCTGGTCTCAAATTCACAGAGAT
TTACCTGCCTCTGCCTCCTGAGTGTTGGGACTAAAGGCATGTGCTTCTAG
GTCTGGTGAGAATTCAAAATTTTAAAACCCCAAAGCAACTAGTACTTTAA
CACAGTAGGTTATATTAAATTAATCCTACTTGTTCCTCTTACGAAAGAAA
CAGTACTACCAGCTCAGGCAGGAGGAAGTAAGAGTTTGAGGTCAGCTTGG
CTTGTGTATTTTTTTAGGCCAGTCTGGGGTACATAGTCTGGGGAAATTTT
GTGTTCCTAAAACGAAGCCCCNAAGNAAGGNAGAAAAGNAANNCAANTTN
TACCCAAATTTAAAGGNNAAATGATTTGGAGGCTGAATTAAAACGTGTTT
TTAATGAGTGAACTGCTTTTAAGCCCTGGTTAAGTTTTTATAAATGTCTT
TTTAATTTTACTTTCTTCTATATGTGTGAATGTTTTGCCTGTATATATGT
AAAACAAGTATGCCTGGTGCCCTTGTTGGTCAGAAGAGTGCTTCAGATTC
TTTGAAACTGAAGTTAGTGATGGTTATAGGCTGCCATGTGGGTGATGGGA
TCCAAACCTGGGTCCTTTGCAAGAGAAATGTGCTCCTAACCACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_g16.g1 MSMg01no158_g16.g1 CHROMAT_FILE:
MSMg01no158_g16.g1 PHD_FILE: MSMg01no158_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:56 2005
         (240 letters)



>mm_chr10_31054592_31055231
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatgagccatcctggtctcaaattcacagagatttacctgcctctgcctcctgagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actatatgaaccatcctggtctcaaattcacagagatttacctgcctctgcctcctgagt 474

                                                                       
Query: 61  gttgggactaaaggcatgtgcttctaggtctggtgagaattcaaaattttaaaaccccaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 473 gttgggactaaaggcatgtgcttcaaggtctggtgagaattcaaaattttaaaaccccaa 414

                                                                       
Query: 121 agcaactagtactttaacacagtaggttatattaaattaatcctacttgttcctcttacg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 413 agcaactagtactttaacacagtaggttatattaaattaatcctacttattcctcttagg 354

                                                                       
Query: 181 aaagaaacagtactaccagctcaggcaggaggaagtaagagtttgaggtcagcttggctt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaagaaaccgtactaccagctcaggcaggaggaagtaagagtttgaggtcagcttggctt 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)