Query= MSMg01no158_n24.b1 MSMg01no158_n24.b1 CHROMAT_FILE:
MSMg01no158_n24.b1 PHD_FILE: MSMg01no158_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:29 2005
(677 letters)
>mm_chr10_115369214_115370288
Length = 1075
Score = 1094 bits (566), Expect = 0.0
Identities = 643/676 (95%), Gaps = 15/676 (2%)
Strand = Plus / Minus
Query: 5 gaattctaaggaatgtgcttgagaattacggcagatacagtcatccactctgcccacagc 64
||||| ||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 768 gaattttaaggaatgggcttaagaattaccgcagatacagtcatccactctacccacagc 709
Query: 65 ctagggcttgcaagtgtggcaagattggaatataacctataagatgttggtaaatattaa 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 708 ctagggcttgcaagtgtggcaagattggaatataccctataagatgttggtaaatattaa 649
Query: 125 atgagtttatatggctggattccctatgctaagtgctggtatcatgctaacatggagaga 184
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 648 atgagtttatatggctgggttccctatgctaagtgctggtatcatcctaacatggagaga 589
Query: 185 taccagaacacacttctatgttcatgtgaggataccaagagaaggcagctgcttcagcac 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taccagaacacacttctatggtcatgtgaggataccaagagaaggcagctgcttcagcac 529
Query: 245 tggaaggtatctcaccagactgcaattaaatgcactagcatttaac---gggattcaaaa 301
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 528 tggaaggtatctcaccagactgcaattaaatgcaccagcatttaaccacgggattcaaaa 469
Query: 302 ctcctgatctacaagaaaggagtttatgatttttctcccttagtcttccccctctcatgg 361
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 468 ct---gatctacaagaaaggagtttatgatttttctcccttagtcttccccttctcatgg 412
Query: 362 tagactgaacaacccaaggcaaggggataaaatcaatatgtctccatgtacaatctagtt 421
||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 411 tagcctgaacaacctaaggcaaggggataaaatcaat--gtctccatgtacaatctagtt 354
Query: 422 cttctcaagtaaactacttactgattgacatgaatgtctttcttattgcctgcttatttc 481
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 cttctcaagttaactacttactgattgacatgaatgtttttcttattgcctgcttatttc 294
Query: 482 tctacctgcataactgcttgacatacctcctactccagccttttgttattccttcaggat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctacctgcataactgcttgacatacctcctactccagccttttgttattccttcaggat 234
Query: 542 gccattctaatgtcatatttttcaagaggtagtaggttctcatgggttaatagttatatt 601
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 233 gccattctaatgtcatatttttcaagaggc-------tctcatgggttaatagttatatt 181
Query: 602 caagtcccaactctctgggcccagtgaacatgaccttatttgaaaatagcctgcagtcgt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 180 caagtcccaactctctgggcccagtgaacatgaccttatttgaaaatagcctgtagtcgt 121
Query: 662 aattgaattaagtcat 677
|||||||||| |||||
Sbjct: 120 aattgaattatgtcat 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1075
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1065
Effective search space: 710355
Effective search space used: 710355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_n24.g1 MSMg01no158_n24.g1 CHROMAT_FILE:
MSMg01no158_n24.g1 PHD_FILE: MSMg01no158_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:29 2005
(264 letters)
>mm_chr10_115207889_115208552
Length = 664
Score = 480 bits (248), Expect = e-140
Identities = 260/264 (98%)
Strand = Plus / Plus
Query: 1 aggagttcaccacgatcggacatcttcagggtgcttctcattccgtgtttgaagggagca 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 201 aggagttcaccacgatcggacatcttcagggtgcttctcgttctgtgtttgaagggagca 260
Query: 61 ggtcctcttcccgtcgcgctcatgttcttggtagaagtggtctcattttctcttgacaat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ggtcctcttcccgtcgcgctcatgttcttggtagaagtggtctaattttctcttgacaat 320
Query: 121 agcatatgaaaactgtagactagtcactcatttcatctacttctttatttaatactgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatatgaaaactgtagactagtcactcatttcatctacttctttatttaatactgttt 380
Query: 181 tgtttttagtgtctgagtactgtgatagacactgggaataaaatgtcatagaagattaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttttagtgtctgagtactgtgatagacactgggaataaaatgtcatagaagattaat 440
Query: 241 cccagtacttgagaggcagaggta 264
||||||||||| ||||||||||||
Sbjct: 441 cccagtacttgggaggcagaggta 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
