BAC Information

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BAC

Clone NameMSMg01-160H22
Chromosome10 (Build37)
Map Location 17,508,532 - 17,508,814
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039576, LOC627511, Cited2
Downstream geneTxlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H22.T7 (MSMg01no160_h22.b1)MSMg01-160H22.TJ (MSMg01no160_h22.g1)
ACCAG360152AG360153
length742742
length of high quality
(start - end)
316 (47 - 362)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no160_h22.b1 PHD_FILE: MSMg01no160_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:28 2005CHROMAT_FILE: MSMg01no160_h22.g1 PHD_FILE: MSMg01no160_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGGAATACCGAATGGCTGAAAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACTTCACTCCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAATATGTCCCAACCGCCCCGAAGGACACATGCTCCAGTAT
GTTCATAGCAGCCTCACCCACAATAACCAGATGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATTTACACAATG
GAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAAACACAAAG
GAACTCGCACAATATGTACTCATTGATAAGTGGATATTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAATTCAAG
AACGAAGACCAAAGTGTGGACACTTTGCCCATTCTTAGAATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAATGGCAGCAGGGGAAAGCC
AGCCCAGTTGTGCACCCAGGTCCAGGAGCGACCTGACCAGCAGCCAGAGA
TCAGTCCTATTTGGGTATGGAGATGTAATCACCACAGAAATGCTAGGATC
CGTGAATTATCTAATAGTTTTTATCTTGAGAGAGATAATATAGAGACATA
CTTCACAGGGTTCTTGTGCAGTTTGAGAAGATAGAGAAGTTCCAATATCA
AATCATTAAAAATAGCCAGGTATGGTGGTACATGCATGGTCACAACCCCA
GTTAGCAGATAAATAATTCCCTTTCATCCGCCAATACTTTTTTTGCATAC
ACTATATTCTGGTCATGCATTTCAAAAAAAACAACTCCTCCCAGATCCTA
CCAACCCAACTCCGTCCTTTGTGTGTCCCTAGCTGTCCTGGAATGCACTC
CAGAGACCCAGCCAGCCTCAAACTCAGAAATTTGCCTGCCTCTGCTTCTG
CCTTTTGAGGGCTGAGATTAATCCTCTCCCTTAAAGAGTAATTCAATCCA
GCAATATGGCTACTCTTGTCTGGGATCTTATTATTCTTTGTCTGTGTGAT
CTGACTGAAACACATATTATGCTTTGCAAACCACCATGGACCCCTTTGTA
TTTTTATATAACATCCTTTGCTGTTGTATTCCTTACAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h22.g1 MSMg01no160_h22.g1 CHROMAT_FILE:
MSMg01no160_h22.g1 PHD_FILE: MSMg01no160_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:28 2005
         (283 letters)



>mm_chr10_17508332_17509014
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaatggcagcaggggaaagccagcccagttgtgcacccaggtccaggagcgacctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaatggcagcaggggaaagccagcccagttgtgcacccaggtccaggagcgacctga 260

                                                                       
Query: 61  ccagcagccagagatcagtcctatttgggtatggagatgtaatcaccacagaaatgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcagccagagatcagtcctatttgggtatggagatgtaatcaccacagaaatgctag 320

                                                                       
Query: 121 gatccgtgaattatctaatagtttttatcttgagagagataatatagagacatacttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccgtgaattatctaatagtttttatcttgagagagataatatagagacatacttcac 380

                                                                       
Query: 181 agggttcttgtgcagtttgagaagatagagaagttccaatatcaaatcattaaaaatagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggttcttgtgcagtttgagaagatagagaagttccaatatcaaatcattaaaaatagc 440

                                                      
Query: 241 caggtatggtggtacatgcatggtcacaaccccagttagcaga 283
           |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 caggtatggtggtacatggatggtcacaaccccagttagcaga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)