BAC Information

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BAC

Clone NameMSMg01-161I19
Chromosome10 (Build37)
Map Location 104,523,349 - 104,523,670
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161I19.T7 (MSMg01no161_i19.b1)MSMg01-161I19.TJ (MSMg01no161_i19.g1)
ACCAG360924AG360925
length1,1751,221
length of high quality
(start - end)
427 (27 - 453)383 (66 - 448)
definitionCHROMAT_FILE: MSMg01no161_i19.b1 PHD_FILE: MSMg01no161_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:17 2005CHROMAT_FILE: MSMg01no161_i19.g1 PHD_FILE: MSMg01no161_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTGCTATGGCGCTATAGACTCNATAGGGAGAGGATCCGCGGAATTCTT
TGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTCTCTGGAGT
CCAGCTTCTTGAGTTCTTTGTATATAATGGATGTTAGTCCCCTATCGGAT
TTAGGATTGGTAAAGATACTTTCCCAATCTGTTGATGGAATTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCGC
ATTTGTCAATTCTCAATCTTACAGCACAAACCATTGGTATTCTGTTCAGG
AATTTTTCCCCTGTGCCCAAATCTTCAAGACTTTTCCCCTACCTTCTCCT
GTGTCTCTGGTTTTATGTGGAGGTCCTTGATCATCCTCACTTTTGTTTTT
CTTCCAGTTTTATTAGGTCATGATAGGCAAGCTTAGACTGAGATTTTTTT
TTTTCCCCCCCCCCCCTTTGTGGAAAGATTATGAAAAAAAAGAGAGGANA
TATTTATTCAGAANAAAAGAAATGGGTTGGAAAATGAGAAGATAGTATAT
TAAGGGAAGNCTTGGTCCCAAGCCAATCATTTCAATGTTAGAGAACTTTC
ATAAATATACCCACATTCTTAGCTTTGTGTCCACATGTTCCATTTTTCAT
GCTTAGAATCAAGAAATTTGACTCTTACGGTATCCTAAACCAGCTCAAGG
CAAATGTCTACACTTTTGAGTAAATCTATCCTTTATGTTTTGTTTTGCTT
CCACTTACATGGATGTCATAATAACTAATACATCACCAAAAGCCAGTTAT
TTTTGTTATAATAAAAGTCATGATCTGTTAAGATAGATTATGGTCTTTGC
AAAACAATTCTTTAGGAAATTTATTATCCTAATCCACACCTAATTTTTCT
TTATAAGTGCATTTTTTAATTAAAGGGTTCCTGTAAACTATAATTATAAA
CTGGGGGTTTGTTTTGTTTTTTTAATTTTTTGTTTATATTTGGTTATTTT
TCCCTCCTTTCTCTCTTTTTTTTTATATTTTACATTCCTTTACTTTCTTA
TTTTATTTTTACTTAATCCTTCTTTTATAGTTATTTCATCATTTATTTCT
TCTCTCCTTTTCTTACTTAGTGATATATTCTTTCTTTTACTTCTTTCTTC
TTACTCTTTTATATTATTGCATTTG
NNTTATATAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCCTCTCATATAGTTATAAAGCTATCTTTTCTT
ATAGTGGCCCTACCTAGGAAATCTGATTAATAGATTTGGTGTGTGGTGAT
GATGAATTTCCTGCTGTTTAGAATGGTACTTCCTCATCTCAGGTGGATGA
AGAGAGTGAATGAATTCCTTTGGATTTTTTCTATGAGGGCAGCATGCCAC
TCATGACGGCTTCATGACCTAGTCAGCTCCCCAAAGGTCACATCTCTTAT
CTTCATTTCTTTTGAGATCAGAATTTCAGGTGTGCACTTGGAAAAACAGA
AAAGGACTGTAGTCTCTAACCTGTTTATTCAAATAGCAATCATTTTTGAA
TTTTAACTGTAACATCCACCAATAGTTTATCAGTCATCTGGGCATCCCTT
TTTTTTTCCCCCCCCCCATATAAAATTAATACTCACATTTAAATCGAAAT
TGCCCAACTATTAATGTATGCACAACAGTTCTAACTCTGTCTAAAACTGA
TCATCTTTAGTAAAACTTGTAATGCTCCAAAACATGGCACTGGACTGAAC
TGAAGGTCCATTCCCAAGCAATATATAATTCTCATTCTACTAGAATGTTT
TTCTATTTGAGAGTGCAGAGATTATTACAATTATAATTCATAATGGATTG
ATTTTTTATATAGCATCTGAGGGGCTTCTGGTAAGTGGGGAAAAAACCTC
ATTTGGTAATACAGAACATGTCTGGACTGTCTTTTCTCTCCTCTGTAGCC
TCTTTTAGGCCACTGGATGTTTCTTGCTTTCACCCATCTGGATATTGCAT
GTCAGGAGGAGGAGGTATGGTGTAGTATTAAAATCCTATCTTGTTGAGGC
ACATGAAGTACGTAATTTTGATTCTCGATCACTCAGGTTTGATAAGTGTC
TTGCCATTTAAGTTTCTCTTAGTCTATTTGGGAAATGAAATTTTTTTAAA
TTTTCTCAAATTTATTCCCTCCTTTGGGTAGGGTGATTATTTTATCATTT
TTTTTCTGTTTGTTTTTTGTCTTTTTAATAAATTTTTTATTAAAAGATTT
TTTTTTATTATTCATTCTTTTATTATGTTATGTGTTTTTCGTTATAATAA
CTATTATTTTTATCTTCTGATCTTATTCTTTCTCTTAGTTGCTTTTTGTT
TTATCTCTTCTTTTTATATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_i19.g1 MSMg01no161_i19.g1 CHROMAT_FILE:
MSMg01no161_i19.g1 PHD_FILE: MSMg01no161_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:17 2005
         (383 letters)



>mm_chr10_104522886_104523670
          Length = 785

 Score =  542 bits (280), Expect = e-158
 Identities = 311/322 (96%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 64  aatagatttggtgtgtggtgatgatgaatttcctgctgtttagaatggtacttcctcatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 785 aatagatttggtgtgtggtgatgatgaatttcctgctgtttagaatggtactttctcatc 726

                                                                       
Query: 124 tcaggtggatgaagagagtgaatgaattcctttggattttttctatgagggcagcatgcc 183
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 725 tcaggtggatgaagagagtcaatgaattcctttggactttttctatgagggcagcatgcc 666

                                                                       
Query: 184 actcatgacggcttcatgacctagtcagctccccaaaggtcacatctcttatcttcattt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 665 actcatgacggcttcatgacctagtcagctccccaaaggtcacatctcttatctccattt 606

                                                                       
Query: 244 cttttgagatcagaatttcaggtgtgcacttggaaaaacagaaaaggactgtagtctcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cttttgagatcagaatttcaggtgtgcacttggaaaaacagaaaaggactgtagtctcta 546

                                                                       
Query: 304 acctgtttattcaaatagcaatcatttttgaattttaactgtaacatccaccaat--agt 361
           |||||||||||||||||||||||||||||||||   |||||||||||||||||||   ||
Sbjct: 545 acctgtttattcaaatagcaatcatttttgaatacaaactgtaacatccaccaatggtgt 486

                                 
Query: 362 ttatcagtcatctgggcatccc 383
           |||||||||||||||| |||||
Sbjct: 485 ttatcagtcatctgggaatccc 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 785
Length adjustment: 9
Effective length of query: 374
Effective length of database: 776
Effective search space:   290224
Effective search space used:   290224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)