Query= MSMg01no161_n23.b1 MSMg01no161_n23.b1 CHROMAT_FILE:
MSMg01no161_n23.b1 PHD_FILE: MSMg01no161_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:59 2005
(417 letters)
>mm_chr10_52399775_52400592
Length = 818
Score = 675 bits (349), Expect = 0.0
Identities = 393/411 (95%), Gaps = 10/411 (2%)
Strand = Plus / Plus
Query: 5 gaattctctgtcttgctcagtagacagagaattatctgaaagcatgggcattgtcttaat 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctctgtcttgctcagtagacagagaattatctgaaagcaggggcattgtcttaat 264
Query: 65 ctttttcatgccttagagtacctcagttgtcctaagttctaaagtgtttgtcaagaatga 124
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ctttttcatgccttagagtatctcagttgtcctacgttctaaagtgtttgtcaagaatga 324
Query: 125 acacaggttttaatattaactttattatgtgaagccattttttt-aaaatcatcttcctt 183
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 325 acacaggttttaatattaactctattatgtgaagccatttttttaaaaatcatcttcctt 384
Query: 184 tttttctctcataattattgtaattggaggaaaccttagctaccccaggctagcaaatac 243
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tttttctctcataattattgtaattggaggaaaccttagctaccctaggctagcaaatac 444
Query: 244 acaggaaaccaaaggggaataataaataattgaatggagtatgtgtgaaaattttcagtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 acaggaaaccaaaggggaataataaataattgaatggagtatgtgtgaaaaatttcagtt 504
Query: 304 ttccaaaactaaaccaaactaaaataaatttttaaattatttcatattttctactgttaa 363
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 505 ttccaaaactaaaccaaactaaaataaatgtttaaattatttcatattttctactg--aa 562
Query: 364 t--ttaaaagcaaaaatttaattaattatatatatatat----gtgtgtgt 408
| |||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct: 563 taattaaaagcaaaa-tttaatttattatatatatatatatatgtgtgtgt 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_n23.g1 MSMg01no161_n23.g1 CHROMAT_FILE:
MSMg01no161_n23.g1 PHD_FILE: MSMg01no161_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:59 2005
(369 letters)
>mm_chr10_52541752_52542520
Length = 769
Score = 659 bits (341), Expect = 0.0
Identities = 362/369 (98%)
Strand = Plus / Minus
Query: 1 ctggagtccttaatgaaagtctgtctcactataccaaatgaaactaacacaaactgctgt 60
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 569 ctggagtccttaatgaaagtctgtctcaagaaaccaaatgaaactaagacaaactgctgt 510
Query: 61 tgtcagtcagtgctctgcagtaaagatcagagcttctgtgaccgttcaattcactgaaca 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 509 tgtcagtcagtgctctgcagtaaagatcagagcttctgggacagttcaattcactgaaca 450
Query: 121 aacatccatccagagcctcctgaagccatactgtaggctatgcccttgagactcctcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aacatccatccagagcctcctgaagccatactgtaggctatgcccttgagactcctcccc 390
Query: 181 ctgtgaagaccatttatctagggaactccatctgaacttaaatgacttctgtgctgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgtgaagaccatttatctagggaactccatctgaacttaaatgacttctgtgctgtatt 330
Query: 241 tgtggctactagcttaggaacacaatcttaaaagttctctcatttccagttgcaaagtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtggctactagcttaggaacacaatcttaaaagttctctcatttccagttgcaaagtat 270
Query: 301 atctaagtcctttcttaatatttttccctttattcctttctgtctctctttttgaaacaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atctaagtcctttcttaataattttccctttattcctttctgtctctctttttgaaacaa 210
Query: 361 aaaggtatc 369
|||||||||
Sbjct: 209 aaaggtatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
