BAC Information

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BAC

Clone NameMSMg01-162A13
Chromosome10 (Build37)
Map Location 30,405,615 - 30,405,931
singlet/doubletsinglet
Overlap geneNcoa7
Upstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
Downstream geneLOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162A13.T7 (MSMg01no162_a13.b1)MSMg01-162A13.TJ (MSMg01no162_a13.g1)
ACCAG361280AG361281
length692693
length of high quality
(start - end)
317 (376 - 692)275 (75 - 349)
definitionCHROMAT_FILE: MSMg01no162_a13.b1 PHD_FILE: MSMg01no162_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:19 2005CHROMAT_FILE: MSMg01no162_a13.g1 PHD_FILE: MSMg01no162_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTAATTTAATTTAAATTTGCCTAAAACATAATGGTCTTATTC
CTTGGTGGAAATTGTCAGTAGGTCTAAGATCTCCAAGACTCCAGGAAGAC
TGGCAGCTCCTTCATACTCAGTCAGATAACACTGCTTGAAATGCACTCAG
ATTCTCCTGTGGGTTAAATACATGACAACCTTAACCTGTCTCTGTCTCCA
CTACATTTTGCAAAGTCAGCTACTTCTCTTGAGTAATCTGAGAATGGCGA
TGTTATGCTTGGGATATTTGTGAAATTTCTAGATTTCTGATTATATAACT
ACTATATCCCAGCTCCCCCCGCTTTGGCTCCTGGTCCTAATTTAACCATA
AAAGCAGTGGATAATTTCAATCTGTCAGTAATCTAATTTAAATTGGGAAT
TCCTTATCTGAAAGGTTTATATCTTGATGTAATTCTAGTATCTGAATCAT
AGCAGGATATTATGACTGACATGTCTTTTTCAAAATGTTTCTATTAAAAT
CTAAAATAGAATGCCCACTTGTAGCCCCACAAATTCAACTGTCCATTTAC
TCAGATCTGGATTAGGCAGAGTGAAGGAGAGCTTATGGGACACCCATTAG
CTACTCTCCCTGGCCATGCTAGGCAAGGATGTATTAAGTGGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTT
AATAGGGTTATTTGTTTCTCTGGAGTCTAACTTCTTTAGTTCTTTGCATA
CATTGGATATTAGCCCTCTATTGGATGTAGGACTGGTGATGATCTTTTCC
CAATCTGTTGGCTGTCATTTTGTATTATTGACAATGTCCTTTGCCTTATA
GAAGTGTTGCAATTTTATGAAGTCCTATTTGTAGGTTCTTGATCTTAGGG
CATAAGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCTGTGCCATGTGTT
TTTTTTTCTTCCCCACCCTCCCCTCTATTAGTTTCTATGTATCTGGTTTT
TTTGTGGAGGCCCTTAATTCACTTGGACTTGAGCTTTTACACAAGGAGAT
AAGAATGGATAAATTTCCATACCTCTACATGCTGACTGCCAGTTGAACCA
GCACCATTTGTTGAAAATGCTGTCTTTTTTCTACTGGATGGTTTTAGCTC
CTTTGTCAAAGATCAAGTGACCATACGGTGTGTGGGATTATTTCTGGATC
TTTAATTCTGTTCCATTGATCTACCTACCTGTCTCTGTAGCAGTACCATG
CAGTTTTTATCACAATTGCTCCTAATACAGCTTGAGATCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_a13.b1 MSMg01no162_a13.b1 CHROMAT_FILE:
MSMg01no162_a13.b1 PHD_FILE: MSMg01no162_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:19 2005
         (317 letters)



>mm_chr10_30405415_30406131
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctcctggtcctaatttaaccataaaagcagtggataatttcaatctgtcagtaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggctcctggtcctaatttaaccataaaagcagtggataatttcaatctgtcagtaatcta 458

                                                                       
Query: 61  atttaaattgggaattccttatctgaaaggtttatatcttgatgtaattctagtatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atttaaattgggaattccttatctgaaaggtttatatcttgatgtaattctagtatctga 398

                                                                       
Query: 121 atcatagcaggatattatgactgacatgtctttttcaaaatgtttctattaaaatctaaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atcatagcagaatattatgactgacatgtctttttcaaaatgtttctattaaaatctaaa 338

                                                                       
Query: 181 atagaatgcccacttgtagccccacaaattcaactgtccatttactcagatctggattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atagaatgcccacttgtagccccacaaattcaactgtccatttactcagatctggattag 278

                                                                       
Query: 241 gcagagtgaaggagagcttatgggacacccattagctactctccctggccatgctaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcagagtgaaggagagcttatgggacacccattagctactctccctggccatgctaggca 218

                            
Query: 301 aggatgtattaagtggt 317
           |||||||||||||||||
Sbjct: 217 aggatgtattaagtggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)