BAC Information

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BAC

Clone NameMSMg01-162F24
Chromosome10 (Build37)
Map Location 69,653,891 - 69,654,208
singlet/doubletsinglet
Overlap geneCcdc6
Upstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik
Downstream gene2310015B20Rik, Slc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162F24.T7 (MSMg01no162_f24.b1)MSMg01-162F24.TJ (MSMg01no162_f24.g1)
ACCAG361522AG361523
length716708
length of high quality
(start - end)
317 (47 - 363)242 (82 - 323)
definitionCHROMAT_FILE: MSMg01no162_f24.b1 PHD_FILE: MSMg01no162_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:44 2005CHROMAT_FILE: MSMg01no162_f24.g1 PHD_FILE: MSMg01no162_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCCTTCACGGTACAGTCTTGATTTTTTTTTTTTTTTGTCCTTT
CGAGAGAAGTACGGTATGTGTTTACAAAATCTTTTCTGGGATTGTAGATT
TCAGTACTGCTGGCTAGCAGCTTTATCCTCCAGCACACAGGTCCGTTCTG
GAAAGTTCTTCCCTCCACTGTCTTTATCAGTTAAGTTACCTCCTAGAAGC
ACAAGTGTAAAAGCACCGGCGTATGGCGAGCGGAGCCTTTGAGACGTAGG
TTCTTGACATTGATGCATAAAGTGTACCTGGGATTCCTGTAGACCCATCA
GTTCACCTCATATTTTTGTCTTCCCCGACGNGCCCCCCAGTCCGAGTCAA
TCCCCGGTCCCTGCAGGGGTCAACAACCAAGAGAACAAACACTAGAGGAT
CTGAATGTATGGTGTATTGTGTCACTTTTGAAGCACATAGTGATAGGTAA
GAGAACCAGATGTTGAGCCCCTAGGGACGGGAGGCCCTTGACTGGGGGTT
GGGCGTGATTTCTAGAGGTTCAGTCGGGAGGCATCCTCCGGGGGTGAGAG
CGAACAGAACCTGCAGTGGGGTGCATTTGCTGGCGTGGTTGACTGACAAC
CCACGGGGTGGCGCTGGTGGCGAGACTGAGGNCCAGGGGCTCGGGAATGC
GCGACGAAACTGTGAC
NNNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCCTCCAGCCCCAT
GCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATGATGGACTGAACC
TCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGC
CTTGGTCATGGTGTCTGTTCACAGCAGTAAGACCCTAACTAAGACACTGT
CTATCCTTCCAGGTAATGGGGGAGGAAGGAACTGTGGCTGGTGGCCTCAG
GGAAACCCAGTTCAATGCTGGCCTCTGTGACACACCCTACTAAGGAACAC
CCTAATAAGGTGACCTATTATTTTGACGCCCACCCCCCCCCACCCTGCTA
AAGGGTGCTTTGGAAGGTTTGCTTTTTACACCAGTAAAAATGATCTCCTA
ACCATAGCCATGTGAGTTAGTTACCTCTCTTGTTGCTAAATACCTAAGAA
ACACCTTAAGACAGGAAGGGTTTATTTCCGATCAAAGTTTGAGGGCTATA
TCCATCACAGAAGAAACATCGCATTAATTGCATCAAACACCTGGGCAAAT
TAACAAAAAGACATAAAGGGCCAAAACTTTGAAATCTCGAAAAACTGTTA
ATAAAGCACACAATATCTTGAATACAAGGATAACAGAATATAGTAAAGCA
CCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_f24.b1 MSMg01no162_f24.b1 CHROMAT_FILE:
MSMg01no162_f24.b1 PHD_FILE: MSMg01no162_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:44 2005
         (317 letters)



>mm_chr10_69653695_69654411
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 310/318 (97%), Gaps = 7/318 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccttcacggtacagtcttgattttttttttttttt-------gtcctttcg 56
           ||||||||||||||| ||||||||||||||||||||||||||||       |||||||||
Sbjct: 197 ggaattcttccttcatggtacagtcttgattttttttttttttttttttttgtcctttcg 256

                                                                       
Query: 57  agagaagtacggtatgtgtttacaaaatcttttctgggattgtagatttcagtactgctg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagaagtacggtatgtgtttacaaaatcttttctgggattgtagatttcagtactgctg 316

                                                                       
Query: 117 gctagcagctttatcctccagcacacaggtccgttctggaaagttcttccctccactgtc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctagcagctttatcctccagcacacaggtccgttctggaaagttcttccctccactgtc 376

                                                                       
Query: 177 tttatcagttaagttacctcctagaagcacaagtgtaaaagcaccggcgtatggcgagcg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttatcagttaagttacctcctagaagcacaagtgtaaaagcaccggcgtatggcgagcg 436

                                                                       
Query: 237 gagcctttgagacgtaggttcttgacattgatgcataaagtgtacctgggattcctgtag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagcctttgagacgtaggttcttgacattgatgcataaagtgtacctgggattcctgtag 496

                             
Query: 297 acccatcagttcacctca 314
           ||||||||||||||||||
Sbjct: 497 acccatcagttcacctca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)