BAC Information

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BAC

Clone NameMSMg01-162G15
Chromosome10 (Build37)
Map Location 93,459,915 - 93,460,191
singlet/doubletsinglet
Overlap geneVezt
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
Downstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162G15.T7 (MSMg01no162_g15.b1)MSMg01-162G15.TJ (MSMg01no162_g15.g1)
ACCAG361550AG361551
length682681
length of high quality
(start - end)
254 (429 - 682)278 (81 - 358)
definitionCHROMAT_FILE: MSMg01no162_g15.b1 PHD_FILE: MSMg01no162_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:47 2005CHROMAT_FILE: MSMg01no162_g15.g1 PHD_FILE: MSMg01no162_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAGTTGCAATCCCAGCTGTAATAGCTACTAAACGCATA
GTTTATTTTATAATACCCTTCACGCATTTAACCTGAGGCTGCTTCTTCAG
AAATAAGACAGCTAACACCATCTCTTTGAGAGGTTAAAGAGTGGATAAGT
AAAAATACACGCACATCTAATGGTCCCTAACAGGTAGTTGGCATTCCATG
TTCCATGAATGAGCGCAGTGCTCACTATGTGAGCAAGAGGACACAGAAGA
ACAAGACTACTGAAGACTTATGAAAAGCTCATACACGAGAGAGCTAAATT
GGTCATTGTATTTGTCTTGCCCCCCCCCCCCCCTGAGGCAGAGAGCAAAA
ACCTTGAGGATGAGGGCTGGACAGAAAGCTCCGAGGTTAAGAGCTCTGGC
TGCTTTTCCAGAAGACCTGGTTTGAATCCCAGCACCCACGTAGTGGCTCA
CAATTGGCTGTAACTCTAGCTCCAGGGGATCCAAGCCCCTCTTCCGGTCT
GGGTAGGCATGAAGCATGCACACGATACACAGGCATACATGCAGATGATA
TAGCCACAGAGATTACATAAAATTAAATTTCAGAAGCGTCGGATAAGAAC
CTTGATCACAACCTTGTACACTATCTCTTCAT
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGATTAAAGCAAAGTGC
TAGCTTCTTCATGAAGCCATATTGTGGCAATGTGACATGCAATAGGGAGT
TGTGGGATAGCTTTAAGCACCTAGCACATTAGATGTTGCTGCCTAGGTAT
TAACATTTCAGCTGGTGAACTTAGGTAAAGGATGTTGGAAAGAAGTGTGT
TCTACAACTGTTTTAGAAAGTATGATATCTAATATGTAAATTATAGATTA
AAAACCACCATTTTATATATTTAAAAGTAAAAACAGTATCTCAGAGATAT
TTTTTGGTTTTGTTTGGCTCCCCCCCCCTCGCACAAAGACCTATCATACA
CAGAGACCATTCTCTGCCCGACTTGAAGGCATGATGGTGCACGCCTACAA
TCCAAGCACTTAGGAGGCTGAATCTATGCAGGCTACAGAGTAAAACCTTG
TCTCAAAAAGATCAAAGTCAAAACAGCTATAATAAAACATAGTTGGTAAC
TGGATAGTCATCCAATTTAATAATCATCGCTAACTTGAAAAAACATTCTT
GCCATAGATCATGAAACAGGCAGGCCTTGCTTGCACTTCTGCACTTCATT
ACTGGAAACAAAAGTATGCATAAAATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_g15.g1 MSMg01no162_g15.g1 CHROMAT_FILE:
MSMg01no162_g15.g1 PHD_FILE: MSMg01no162_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:47 2005
         (278 letters)



>mm_chr10_93459715_93460392
          Length = 678

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgattaaagcaaagtgctagcttcttcatgaagccatattgtggcaatgtgacatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgattaaagcaaagtgctagcttcttcatgaagccatattgtggcaatgtgacatgc 260

                                                                       
Query: 61  aatagggagttgtgggatagctttaagcacctagcacattagatgttgctgcctaggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagggagttgtgggatagctttaagcacctagcacattagatgttgctgcctaggtat 320

                                                                       
Query: 121 taacatttcagctggtgaacttaggtaaaggatgttggaaagaagtgtgttctacaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatttcagctggtgaacttaggtaaaggatgttggaaagaagtgtgttctacaactg 380

                                                                       
Query: 181 ttttagaaagtatgatatctaatatgtaaattatagattaaaaaccaccattttatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttttagaaagtatgatatctaatatgtaaattatagattaaaaaccaccattttatagat 440

                                                
Query: 241 ttaaaagtaaaaacagtatctcagagatattttttgg 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaagtaaaaacagtatctcagagatattttttgg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)