BAC Information

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BAC

Clone NameMSMg01-162M06
Chromosome10 (Build37)
Map Location 104,906,045 - 104,906,354
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M06.T7 (MSMg01no162_m06.b1)MSMg01-162M06.TJ (MSMg01no162_m06.g1)
ACCAG361787AG361788
length713717
length of high quality
(start - end)
316 (42 - 357)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no162_m06.b1 PHD_FILE: MSMg01no162_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:13 2005CHROMAT_FILE: MSMg01no162_m06.g1 PHD_FILE: MSMg01no162_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATATATCATATTGCGGCACCACAGAAGAGGCTCCATGTAGTCATTTTT
ATGAGGAATTTGGTTCCAGCCACTTGACAACAAGCATCATAAGCCTTCTG
GGAACAGCGCACTGCTCCACATTAGTGTCTAGGCTAGGTGGGAAATGCTT
CATCAGAATGCTTTCCAACGGTAAAAAATACCAAGCTCTTACAGAATGCC
CCCACTACCATTAAAAATGAATAACATGTGGAAAACAGGAGAAATAATGA
TGCTGTGATCAATATAAACAGTAGATTATAAATACGAGACATATATATGA
ATGAATAGTTGTCACTCCCCCCCCCCAAACTAAAGATAATTGATTCTAAT
CCTGGCATAAACCACAGCATGAATCACCATTCAACCTTACCTGGAATAGA
CTCGTCTTCATGCTTTAAATTGTTTTATCTGTTGATAAGTGTAGGATGTG
TTTGTGGGGGCATACACGGGAGAAGGCATATGCGTGGAGTTTGGAGACAA
ATTTAGGAAGTTGGTTCTCTCCTTCTTCCTTTACGTGGATTTGGAGATAG
AACTCAGGTTGTCAAGCTAATGCTGCAAAAGCTTTCCTCGTCGAGCCAAC
TTAGCCCCCAGCATACCCTTACATGCTACCTTTTGATTTAATCACCTTGA
CTCACAAGATGAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAGCATGAAGAAAGGCTTTCTGAACAG
AATACCCTTTGCTCAGACACTAAGGTCAACAATTAATAAATGGGACCTCA
TAAAACTGAAAAGCTTCTCTAGGGCAAAGGAGACTGTCATTCAGACAAAG
CAGCCACCTACAGAACTGGAAAAAATTTTTTACCAACTCCACATCTGATG
GAGGACTAATATCCAAAATATATAACATACTCAAGAAACTTTATCTCAAA
TAAGCCAAACAATCTGATTAAAAATGGGGTACAATCCAAACTGAGAATTC
TCAGCATATTATATTCACACGCCCCACAAACACTTAAAGAAATATTCAAT
AAGTATAGTCATGCCCCAATTTGAATCAAAACTACTTTGAGATTTATCTT
ATGTCCATCGGAATGGCCAAGATCAATGAGACAAGTAACAGGGTATGCTG
GTCAAGATGTGCAATAAGGTGAACACTCATCTGTTGCTTGTGGGAGTGAA
AACTCATACAACTACTGTGATTCCTCAGCTTATGTTTCCTCAGGAAGATG
GGAACTGATCTACCTCAAGATATGGCTATACAACCCTTGAGAATATGTTC
CAAAAAAATGCATCATCCTACCAGAGAGACATTTCCTAAAGTGTGTTCTC
TGCTGCTCTATTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m06.b1 MSMg01no162_m06.b1 CHROMAT_FILE:
MSMg01no162_m06.b1 PHD_FILE: MSMg01no162_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:13 2005
         (316 letters)



>mm_chr10_104905841_104906554
          Length = 714

 Score =  563 bits (291), Expect = e-165
 Identities = 307/313 (98%), Gaps = 4/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatatcatattgcggcaccacagaagaggctccatgtagtcatttttatgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatatcatattgcggcaccacagaagaggctccatgtagtcatttttatgag 264

                                                                       
Query: 65  gaatttggttccagccacttgacaacaagcatcataagccttctgggaacagcgcactgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatttggttccagccacttgacaacaagcatcataagccttctgggaacagcgcactgc 324

                                                                       
Query: 125 tccacattagtgtctaggct-aggtgggaaatgcttcatcagaatgctttccaacggtaa 183
           |||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||||
Sbjct: 325 tccacattagtgtctaggctgag-tgggaaatgtttcatcagaatgctttccaatggtaa 383

                                                                       
Query: 184 aaaataccaagctcttacagaatgcccccactaccattaaaaatgaataacatgtggaaa 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 384 aaaataccaagctcttacagaatgcccccactaccattaaaaatgaataac--gtggaaa 441

                                                                       
Query: 244 acaggagaaataatgatgctgtgatcaatataaacagtagattataaatacgagacatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acaggagaaataatgatgctgtgatcaatataaacagtagattataaatacgagacatat 501

                        
Query: 304 atatgaatgaata 316
           |||||||||||||
Sbjct: 502 atatgaatgaata 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 714
Length adjustment: 9
Effective length of query: 307
Effective length of database: 705
Effective search space:   216435
Effective search space used:   216435
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)