BAC Information

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BAC

Clone NameMSMg01-164B11
Chromosome10 (Build37)
Map Location 99,756,440 - 99,887,389
singlet/doubletdoublet
Overlap geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051
Upstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
Downstream geneTmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164B11.T7 (MSMg01no164_b11.b1)MSMg01-164B11.TJ (MSMg01no164_b11.g1)
ACCAG362685AG362686
length731745
length of high quality
(start - end)		312 (52 - 363)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no164_b11.b1 PHD_FILE: MSMg01no164_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:50 2005CHROMAT_FILE: MSMg01no164_b11.g1 PHD_FILE: MSMg01no164_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,887,082 - 99,887,389)(99,756,440 - 99,756,726)
sequence
NCCCTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCCCATAGTTCCTGCTTTATTTTTTGTTCCACTTTGGTC
CTGATCATTATCCCAGAAATTAAGCAAACTAGGACAGTAAGTAAACATGA
TCAAAAACCAGTCAATACCTGAATTCCTTCTTACATTGTCCCACACATTA
TTAACTATTTTTTTTCTGTTTTGTTGTTGTTTGTTTGTTTGTTTTAGATT
TGTGAAGAATTGGTCAATCGTTCAGCTTGGATTGCTGAATGGTCAGTACA
AAAAGATTATAAGAATTTTGTTTTCTGAATAGTTCTACTAATGATAGGTT
AAACAAATAGTTGTTAAAATGCGTTCCGAGCCATNCGCCTATTCATTTGT
CTTGGTCAGAGAATTCCTTATCCCCCCACAAAAAAATAAAAATTGTCTTT
GAGAGGCGATTATAATTCGTTTCATCTATTCCCTCCATCCCTCTTCATGC
ACCTTCACTATCGACTAACGCTCCTGTACCCCTTTACTGACCCTTATAGC
CACGTTTATCCCCCCTTTTATTCCCCTGTTTACCCCTTATTTGTCGATCC
CGCCTTATTGACCCCTATGTACCTCCCTATTTTATTTCTCCCGACCTTTT
ATCCTGATCTCCCGCACTTCTTTCCTTATTCCTCCTTCTATCCGTCCCTC
ATACGCTGCTTTTCTTGTTCCCCCCCTGTTT

CCTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGGCTAAAGGATGGACCTGT
AATTAAGTAAAAGGGCAAGTTCATTATAAAGAAGAAAATAACACCGGAGA
GTAATAGGAGTCTGTCTCTCAGACTGAGGATAGACTATTAACTAAAATTC
GATTAACAGGTTGAATGCTCAAAATGCCAAACAGAATCTAAGATATGCTA
TATATTTTTTCTTTTGACCAAAAATGTACAAATATATTGTTAGTTTTTAA
TGATAGGAATTATGAAATTACATTGTATGCTGTGTTTTCTATATGCATGT
TAAAACATCCAGTTTTTTTTGAGACCCCCCCCACCCGGTGCCCGATTGAT
TTCTTAGTAATAGGTAAAATCGCCACACTGCAACACTGAATGTCAAAGGC
TTCTGGAAATAAGAGAATCCCATTGGAAGTTCTACCTCTACTAGAGGTTA
GGAGGACTAGATGCCAATGTATGGCAGATAGATGGTAGAGAGGTTCTCCC
TACCCCTCTGAAAGGTTGACCTCTCTTTTATGTACAGAGGAATAACCCTA
GCGCATTATGTTCCATTTTTCCGCCCCATTTATCCTATAGTTTTTCTCTA
TCGTTATGCTTGCCCTCTCCGTTCTCTATGGATATCCTACCCTGTACCTG
ATCCTGTTTCATTAATACTTCGGTTCGCCTTTCCCCCTTTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_b11.b1 MSMg01no164_b11.b1 CHROMAT_FILE:
MSMg01no164_b11.b1 PHD_FILE: MSMg01no164_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:50 2005
         (312 letters)



>mm_chr10_99886878_99887589
          Length = 712

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccccatagttcctgctttattttttgttccactttggtcctgatcattatccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcccccatagttcctgctttattttttgttccactttggtcctgatcattatccca 453

                                                                       
Query: 65  gaaattaagcaaactaggacagtaagtaaacatgatcaaaaaccagtcaatacctgaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaaattaagcaaactaggacagtaagtaaacatgatcaaaaaccagtcaatacctgaatt 393

                                                                       
Query: 125 ccttcttacattgtcccacacattattaactattttttttctgttttgttgttgtttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ccttcttacattgtcccacacattattaactattttttttctgttttgttgttgtttgtt 333

                                                                       
Query: 185 tgtttgttttagatttgtgaagaattggtcaatcgttcagcttggattgctgaatggtca 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 332 tgtttgttttagatttgtgaagaattggtcaatcgttcagtttggattgctgaatggtca 273

                                                                       
Query: 245 gtacaaaaagattataagaattttgttttctgaatagttctactaatgataggttaaaca 304
           ||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 272 gtagaaaaagattataagaattttgttttcagaagagttctacaaatgataggttaaaca 213

                   
Query: 305 aatagttg 312
           ||||||||
Sbjct: 212 aatagttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_b11.g1 MSMg01no164_b11.g1 CHROMAT_FILE:
MSMg01no164_b11.g1 PHD_FILE: MSMg01no164_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:50 2005
         (290 letters)



>mm_chr10_99756240_99756929
          Length = 690

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataggctaaaggatggacctgtaattaagtaaaagggcaagttcattataaagaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggctaaaggatggacctgtaattaagtaaaagggcaagttcattataaagaagaaa 260

                                                                       
Query: 61  ataacaccggagagtaataggagtctgtctctcagactgaggatagactattaactaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacaccggagagtaataggagtctgtctctcagactgaggatagactattaactaaaa 320

                                                                       
Query: 121 ttcgattaacaggttgaatgctcaaaatgccaaacagaatctaagatatgctatatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgattaacaggttgaatgctcaaaatgccaaacagaatctaagatatgctatatattt 380

                                                                       
Query: 181 tttcttttgaccaaaaatgtacaaatatattgttagtttttaatgataggaattatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttttgaccaaaaatgtacaaatatattgttagtttttaatgataggaattatgaaa 440

                                                          
Query: 241 ttacattgtatgctgtgttttctatatgcatgttaaaacatccagtt 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacattgtaggctgtgttttctatatgcatgttaaaacatccagtt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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