BAC Information

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BAC

Clone NameMSMg01-164B17
Chromosome10 (Build37)
Map Location 8,456,446 - 8,456,767
singlet/doubletsinglet
Overlap geneSash1
Upstream geneKatna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164B17.T7 (MSMg01no164_b17.b1)MSMg01-164B17.TJ (MSMg01no164_b17.g1)
ACCAG362692AG362693
length739738
length of high quality
(start - end)
317 (46 - 362)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no164_b17.b1 PHD_FILE: MSMg01no164_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:51 2005CHROMAT_FILE: MSMg01no164_b17.g1 PHD_FILE: MSMg01no164_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGTCGTTTACTCTTTACGGAGGACAGCTGGCTTATATACATCA
TCCTTTACATTTCCTGTTTCATTTCCATGTCAGAAGAGCAAAGCTAAAGC
CTACATACAGGCAGGGGTCTGAGGCTAGTGTGACATAACACATTGGCTTA
GTCCCATTGTCCTAGGCTCAGATCCCAAGATTTGTACCAGAATCATCTCA
TAGGATGCTAACTTGGAAGGCTCAGGCAGACTCCTTGTTCATAAATCCCA
TTTTGAGTCTGTGCATTTGCACTGCTTGGAATACTCAAAATGGTATTTCC
TTTTATCGATCTTGTTTCAAACCCCCCCCACCCTTAGCAGCTCTAATTAC
TGTTGAGAGGCCACACCCCCATGTCGCCTAATGATGTAAGACTTTCCATT
TCATGCAGTTAAATTCATTCTATTTAAGAAATACTTCCTGCAAGTACCTT
GATAACTTAGAGAACCACAGTAGTGTTCTGCCGAACTCAGTTTGTTTGCA
GTAGTAAGAGAGATCCAGTGAGGTTCTTGAAGATGTGAAGGGACATCTTG
ATGTTCTCCTAGCTTACACTTCCTCTGATAGTATTAAGTATAGTTCCAGT
ATTGTTTGGAAGCCAAACCTTCCCAATGTCTCCCACAGGCTAGAAAGGTG
GCAGTCTGCACTCAGCCTTCTGTTTGGAACAGATGGTCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTCTTTACCTTTGCCCAGTAAT
TGGCTTCTTCCGTCTTTATTGACATAATCCAGAAACAATTAGGGAACCAG
ATTTTAGCGTCAGTTCCTCCCCTTACAATCCCTTGGTAGTTTTATGACTG
CTTTCTCTTGGCTCATTATGAAGTAGAATAAGACTATTAGATGCTGGTTT
ATTGATCTATTGAGTGATTTACCTAAAGAGCTGCTGGTACTGTGCTATCG
CCAGACATGAGGTCATGGAACAGATTGACCCGGACAAATAGCTGAAACAC
AATATGCTGTTGTTCTTAGCACCCCGCACCACAAAAGCTTCACACCTGCC
AAGGGTAAATATGCCTTCAAAAAGCAAAAGCCCCCAAACTGACGACCACT
CATGCTTCTAGAAAACCTGCTTGCTTACTCACCCCACACTGTGGTTTTTG
AGTATAAAATGAGAATGCAAAGCAGACTCGGGACTGAAGCCTTTTAGGAG
CTGTTCTGGCTTCAGTCCAGCAGTCAAATCTCCTCTCTTCCTCTCTCACT
GGTATTGGGGTGCTAATTCCAGAGAGGTTCCTACAACAATTCATTGAAGG
CTCTGCCTTGTCTACTTACATAGCCCAGAAGACAGAGACTATCTATTGAG
TTACAGGACAGGACAACAAACTGCACATCCATCCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_b17.b1 MSMg01no164_b17.b1 CHROMAT_FILE:
MSMg01no164_b17.b1 PHD_FILE: MSMg01no164_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:51 2005
         (317 letters)



>mm_chr10_8456281_8456997
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 311/322 (96%), Gaps = 9/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtcgtttactctttacggaggacagctggcttatatacatcatcctttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattctatgtcgtttactctttacggaggacagctggcttatatacatcatcctttaca 428

                                                                       
Query: 65  tttcctgtttcatttccatgtcagaagagcaaagctaaagcctacatacaggcaggggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttcctgtttcatttccatgtcagaagagcaaagctaaagcctacatacaggcaggggtc 368

                                                                       
Query: 125 tgaggctagtgtgacataacacattggcttagtcccattgtcctaggctcagatcccaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaggctagtgtgacataacacattggcttagtcccattgtcctaggctcagatcccaag 308

                                                                       
Query: 185 atttgtaccagaatcatctcataggatgctaacttggaaggctcaggcagactccttgtt 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 307 atttgtaccagaatcatctcataggatgctaacttgggaggctcaggcagactccttgtt 248

                                                                       
Query: 245 cataaatcccattttgagtctgtgcatttgcactgcttgga---------atactcaaaa 295
           |||||||||||||||||||||||||||||||||||||||||         ||||||||||
Sbjct: 247 cataaatcccattttgagtctgtgcatttgcactgcttggaatttctctgatactcaaaa 188

                                 
Query: 296 tggtatttccttttatcgatct 317
           |||||||||||||||| |||||
Sbjct: 187 tggtatttccttttattgatct 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)