BAC Information

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BAC

Clone NameMSMg01-165C10
Chromosome10 (Build37)
Map Location 109,628,370 - 109,629,066
singlet/doubletsinglet
Overlap genenone
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C10.T7 (MSMg01no165_c10.b1)MSMg01-165C10.TJ (MSMg01no165_c10.g1)
ACCAG363396AG363397
length7391,198
length of high quality
(start - end)		700 (40 - 739)87 (220 - 306)
definitionCHROMAT_FILE: MSMg01no165_c10.b1 PHD_FILE: MSMg01no165_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:12 2005CHROMAT_FILE: MSMg01no165_c10.g1 PHD_FILE: MSMg01no165_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATAATATGAACGTGATGACGTGTTACTTTGACACATTTATCTTCCTCTTT
CTTCCCTGACATTCCATTCCCTTTCTTTCACCCAGCATAAAAACATGTGC
TTTCTTTGGGATTAGTTTTTGGGAGGAGAAAGTCAACCAGGAAGGAAGAA
CATTAAGTGGTAAAACTTGGTAATCTGCCAAATGTTTTTCTCAGTATTTT
ATCTCACCATTAATGTCACACAAATTCTTAGAGCTTAGAGATATGTTGAC
TCGTCTTGTGTCATGTGAATTCTAGGTTCTAACTTTTCAGCAAATTTTAC
ATAATTTGTATCTATTGTCATTTTCAAAAGTTTTGTGCAATATTAATGAT
AAAATATAGTGTAAGGCTGATGCATTTTATACTCAAATCCTTATGCTTGC
TTGAACAATAATAAGGGATAGCAGTCAATGTTATGCCTTTTGTTAGAGAA
ATTGGGGACGGTAGCCCACATATTACACTTATATGAAGCTTATCAATTCT
TATCATCCATGAGAAAGGTGGAAGTGGAGATGAAGGAAATAGGGTTTTTA
CTGCATTAAACATATTGTGACAGATACAAGAGCCCATGCTCTATCATCAT
CTATTTTCATGAAGAAAGAAAGAAAAATGGGATGCATCTTAGGTTTCTTT
CTATCTTTTAAGTACATGTGCCTAAGTACTATAATTGGC

GAACTCCTNNNNAACGATGACAGACGCCGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGAAAAGAGAGGCATTAAA
GGGATTTGATGAATTTGAGAGAGAGTTCGCCTTGCTTACCAAGAGATTTG
TATGCAGCAGGCCATACCCCATTACTCATTCTGGCTGATTTAACAGCAGA
GGGTCTAACCTACCTACTGTTGAGAAAATTTAAAAAGGCAGTGATTACCT
TGACCAAGATCATGTAGCTAATAAATCACAGAGGTGGAATTCCATCCCTG
TTGCTCTTCCTTTCTATACCCCAGTCATTTTGAAATTTAGCATCATGAAG
GTGGAGAGGGAGTTTTAAGGCAGACTGAAATTTTCTTTCCGTATGTACAG
AAATACCAGGAGGGTTAAAGGTATGATTAGCTTTCCTCATAAGGACCCTT
TGTGTTAAACTTTGTATACATGTAACCCGGGATGCTACATGTGTATTTAA
GGCCTGAAAGGCCACGCTGTATCACAGGAAAGACCCCTCCCGTCCCAAGA
CAGCAGTATTGGAGACAGTTCCGCACCCGCCGCCCCCCCAGCCCAGTGTA
TCTATTCCCCATGCTGTCCCCAGATCCCCCCAAGTAGCCCCGCTTTCCCT
AGCGGACTGTAAGTTGGAAGACATGCCGCTTCTAAACCGAGGTTTTAACT
TCCTAATGTTCCTCTGGCTCTTTTCCCTCCATCCGCCCAGGATGCCCAGA
TGCTAAACTTATAGATTGTCCCTCCACCTCCGGCCCCCGGATAAGAAAGA
TCCCGAAACCTACCCCTTAGGTATACTGCCCGCACCATGCGCCGCACTGA
GACACGTCCCCCCCACCCCCCCCCCAAGGCCTACCCCCTGCCCCGTACCC
ACCCCCCCCCACGGACCCCCCCCTGCCCCCCCCGGCACCCCCGGCCCCCC
CCCCCTCATTCTCCCCCCCTACACCCCCCCCCCCCTCCCCCTCCCCCCCC
CCCCGCCTCCCCTTCACCCCCCCACCACCATCCCGCCCCCCCCCCCAACC
CCCCCCCCCCTCTCCCTCAACCCCCCCCCCCTCTCCCCCCCCCCCCCGAC
CCCCCCCCCCCTCCCCCCCCCCCCCCCGCCCCCCCAAGCCCCCCCCCACA
ACTCCCCACTTCCCCACCCCCCCCGCAATCCCACACCCCCTTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c10.b1 MSMg01no165_c10.b1 CHROMAT_FILE:
MSMg01no165_c10.b1 PHD_FILE: MSMg01no165_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:12 2005
         (700 letters)



>mm_chr10_109628167_109629266
          Length = 1100

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaataatatgaacgtgatgacgtgttactttgacacatttatcttcctctttct 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ggaattcaataatatgaaagtgatgacgtgttactttgacacatttatcttcctctttct 841

                                                                       
Query: 64  tccctgacattccattccctttctttcacccagcataaaaacatgtgctttctttgggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tccctgacattccattccctttctttcacccagcataaaaacatgtgctttctttgggat 781

                                                                       
Query: 124 tagtttttgggaggagaaagtcaaccaggaaggaagaacattaagtggtaaaacttggta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tagtttttgggaggagaaagtcaaccaggaaggaagaacattaagtggtaaaacttggta 721

                                                                       
Query: 184 atctgccaaatgtttttctcagtattttatctcaccattaatgtcacacaaattcttaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atctgccaaatgtttttctcagtattttatctcaccattaatgtcacacaaattcttaga 661

                                                                       
Query: 244 gcttagagatatgttgactcgtcttgtgtcatgtgaattctaggttctaacttttcagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gcttagagatatgttgactcgtcttgtgtcatgtgaattctaggttctaacttttcagca 601

                                                                       
Query: 304 aattttacataatttgtatctattgtcattttcaaaagttttgtgcaatattaatgataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aattttacataatttgtatctattgtcattttcaaaagttttgtgcaatattaatgataa 541

                                                                       
Query: 364 aatatagtgtaaggctgatgcattttatactcaaatccttatgcttgcttgaacaataat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aatatagtgtaaggctgatgcattttatactcaaatccttatgcttgcttgaacaataat 481

                                                                       
Query: 424 aagggatagcagtcaatgttatgccttttgttagagaaattggggacggtagcccacata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagggatagcagtcaatgttatgccttttgttagagaaattggggacggtagcccacata 421

                                                                       
Query: 484 ttacacttatatgaagcttatcaattcttatcatccatgagaaaggtggaagtggagatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 ttacacttatatgaagcttatcaattcttatcatccatgagaaaggtggaagtagagatg 361

                                                                       
Query: 544 aaggaaatagggtttttactgcattaaacatattgtgacagatacaagagcccatgctct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaggaaatagggtttttactgcattaaacatattgtgacagatacaagagcccatgctct 301

                                                                       
Query: 604 atcatcatctattttcatgaagaaagaaagaaaaatgggatgcatcttaggtttctttct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atcatcatctattttcatgaagaaagaaagaaaaatgggatgcatcttaggtttctttct 241

                                                
Query: 664 atcttttaagtacatgtgcctaagtactataattggc 700
           |||||||||||||||||||||||||||||||||||||
Sbjct: 240 atcttttaagtacatgtgcctaagtactataattggc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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