BAC Information

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BAC

Clone NameMSMg01-165E14
Chromosome10 (Build37)
Map Location 114,087,138 - 114,087,824
singlet/doubletsinglet
Overlap geneTrhde
Upstream geneLOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165E14.T7 (MSMg01no165_e14.b1)MSMg01-165E14.TJ (MSMg01no165_e14.g1)
ACCAG363491AG363492
length7411,219
length of high quality
(start - end)		691 (39 - 729)---
definitionCHROMAT_FILE: MSMg01no165_e14.b1 PHD_FILE: MSMg01no165_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:23 2005CHROMAT_FILE: MSMg01no165_e14.g1 PHD_FILE: MSMg01no165_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
CATGCAATACAGGATAACGCCTCTTGATCCCCTTGCCTCTACCTCCTAAG
CAAGCTAATTACTGAAGTCACAATGTACGAGGATGGTTATTGAACCCAGG
GCTTCATGTATGTTGGTCAAGGACTCCACCAACCCTAGCCAAATACCTGA
CATTTTAAAGTACACAGTCCCTCACAGCACACCGTAGCAGGTAAGCCCTT
CATAAATCAGCATCATTATAGACCATCTCCGCTGTTCATTTCATCACTGG
TCCCTCAAGTTTAGCTGCACAGAAAGTTAGCCCTTTGCTCTTCTTTTAGG
CTCTGTGACCTTCTTCCTTATAAGATGCCTTGACAGTTCAAGGGCATTTT
ACTTTCTTCACCACAAATTTGACATTTTATTTTTATCTTTCTCCCACTTC
TGAGCTTTCACCACAACACTGACAGTGACGTAACTGTTACAGACATAGAG
TAAAAAGCAAGTACTAAAATGTTAAATTCATCAACTGATATTCTCTCGTC
AATGATACAAGACGGTAAAGGGTTTCCTCTGAAGCAGGCATAGAAACTTC
AGACTATTAAAGAAATTATTTGTTAGGGCTTAGACCAAGGAAAAATATAG
TCTTTCTATTTATTTTCTGCCTTTCTCATAATGAAAAATTCTCTCTAGGG
CTTTCTGTCAGTTGTCATGAAATGAGGATCTTAACTGAAAG

NAAAGCCCCNNNAAAGACGCGAGNCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCTGGAAGGGAAATGCCGG
GACCAAGAGGGGATTTGATGCCGAAGGGCCCCCCCTCTAGAGACTGCCCC
CACCAGGGACCCCTCCCCTCTGCTGACCCCAACTTAGACCCCATTGCTGA
GGCCCAGAAGTGCTTACTGACGGGAGCCCTGGTATAGCTGTCCCCTAAGA
GGCTCTTCCCGAGCTGGACCCATACAGATGCAGATGTACACAGCCCTCTG
ACTGAGCATGGGGACCTCCATAGAGAAGTGAGGGCAAGAGCCTACGGAGG
TAAAGGGGTTTACAACTCCATAGGAAGAACAACAATATCAACCAACCTTA
CCCTTCCCCCCGCCAGAGCTCCCCAGTAGCTGAGACCAGACCCAAGAATA
TTTCGTGTGTATCCCTGGCTCCCGCTGCACCCGCAGCAGAGGATTGCCTT
ATCTGGNATCACTTGGATGGGGAGCCCCCCTGCTCTTTGGTACGGAAACC
GTAGGCTACTGGCCCGCAGCAGGTGCGCGGCTCGCCCCCCCCCCCCCTCC
CCCCCCCGCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCC
CCCCTCTCCTCCCTCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCC
CTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCC
CCCTCTCCCCCCCTCCTCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCCCC
CCCCCCCCCCCCCCCTCCCTCCCCCCCTCCCTCCCCCCCCCCCCGTCCCT
CCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTCCCCTCCCCC
CCCCCCCCCTCACCCCCCCCCCCCCCCCGCCCCCCCCCCTCTCTCCCCCC
CCCCGCCCCCTCCCCCCTCTCCCCTCCTTCCCTCCCCCCTCCCCTCCGTC
CCCCTCCCCCCACCCCCCCCTCCTCCCCCTCTCTCTCCCCCTCCCTCTCC
NCCCCTCCACCCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_e14.b1 MSMg01no165_e14.b1 CHROMAT_FILE:
MSMg01no165_e14.b1 PHD_FILE: MSMg01no165_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:23 2005
         (691 letters)



>mm_chr10_114086934_114088024
          Length = 1091

 Score = 1266 bits (655), Expect = 0.0
 Identities = 679/687 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcatgcaatacaggataacgcctcttgatccccttgcctctacctcctaagca 64
           ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcatgcaataaagcataatgcctcttgatccccttgcctctacctcctaagca 264

                                                                       
Query: 65  agctaattactgaagtcacaatgtacgaggatggttattgaacccagggcttcatgtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctaattactgaagtcacaatgtacgaggatggttattgaacccagggcttcatgtatg 324

                                                                       
Query: 125 ttggtcaaggactccaccaaccctagccaaatacctgacattttaaagtacacagtccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggtcaaggactccaccaaccctagccaaatacctgacattttaaagtacacagtccct 384

                                                                       
Query: 185 cacagcacaccgtagcaggtaagcccttcataaatcagcatcattatagaccatctccgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacagcacaccgtagcaggtaagcccttcataaatcagcatcattatagaccatctccgc 444

                                                                       
Query: 245 tgttcatttcatcactggtccctcaagtttagctgcacagaaagttagccctttgctctt 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 tgttcatttcatcactggtccctcaagtttagctgcacggaaagttagccctttgctctt 504

                                                                       
Query: 305 cttttaggctctgtgaccttcttccttataagatgccttgacagttcaagggcattttac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttttaggctctgtgaccttcttccttataagatgccttgacagttcaagggcattttac 564

                                                                       
Query: 365 tttcttcaccacaaatttgacattttatttttatctttctcccacttctgagctttcacc 424
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcttcagcagaaatttgacattttatttttatctttctcccacttctgagctttcacc 624

                                                                       
Query: 425 acaacactgacagtgacgtaactgttacagacatagagtaaaaagcaagtactaaaatgt 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaacgctgacagtgacgtaactgttacagacatagagtaaaaagcaagtactaaaatgt 684

                                                                       
Query: 485 taaattcatcaactgatattctctcgtcaatgatacaagacggtaaagggtttcctctga 544
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 taaattcatcaactgatattctctcatcaatgatacaagacggtaaagggtttcctctga 744

                                                                       
Query: 545 agcaggcatagaaacttcagactattaaagaaattatttgttagggcttagaccaaggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcaggcatagaaacttcagactattaaagaaattatttgttagggcttagaccaaggaa 804

                                                                       
Query: 605 aaatatagtctttctatttattttctgcctttctcataatgaaaaattctctctagggct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatatagtctttctatttattttctgcctttctcataatgaaaaattctctctagggct 864

                                      
Query: 665 ttctgtcagttgtcatgaaatgaggat 691
           |||||||||||||||||||||||||||
Sbjct: 865 ttctgtcagttgtcatgaaatgaggat 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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