Query= MSMg01no165_l24.b1 MSMg01no165_l24.b1 CHROMAT_FILE:
MSMg01no165_l24.b1 PHD_FILE: MSMg01no165_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:01 2005
(690 letters)
>mm_chr10_89527989_89529078
Length = 1090
Score = 1263 bits (653), Expect = 0.0
Identities = 678/687 (98%), Gaps = 2/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctatgatgcc-cagctatgctgcatattctccattgaggatggaagagttt 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctatgaagccacagctatgctgcatattctccattgaggatggaagagttt 264
Query: 64 ctgtctaatcgggaacttgttacaatttccttttatagaggacttcacaagggatttttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtctaatcgggaacttgttacaatttccttttatagaggacttcacaagggatttttt 324
Query: 124 ttcctacttctatcatgtttgatgttccaaatagattttaaaaactggttgagtgcatat 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 t-cctacttctatcatgtttgatgttccaaatagattttaaaaactggttgagtgcatat 383
Query: 184 tacttttagtttcagaaggcatcatgtatatttaagcggcatttaactattataaattat 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 tacttttagtttcagaaggcatcatgtatatttaagaggcatttaactattataaattat 443
Query: 244 tttgatgacttaaaaaagatgtcaatactgagttgtatattttaaaatcaattttattag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgatgacttaaaaaagatgtcaatactgagttgtatattttaaaatcaattttattag 503
Query: 304 tttaataaaaaaattctcaaactccagaaatcatgaggcagctagagaaaagtgtaaaat 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttaataaaaaaattctcaaattccagaaatcatgaggcagctagagaaaagtgtaaaat 563
Query: 364 tactttaagcaccaacgatctcattaacgtgtgaagagtttgacgccaaagtctgtattt 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 tactttaagcaccaacgatctcattaacgtgtgaagagtttgatgccaaagtctgtattt 623
Query: 424 tattcatcactacacccctagtaactagcattagaccaacatttattaggtgctcaatag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tattcatcactacacccctagtaactagcattagaccaacatttattaggtgctcaatag 683
Query: 484 atgtgtgttaaatgaatatattgagagctctaaagtaaatcagttttaataatttaacaa 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 atgtgtgttaaatgaatatattgagagctctaaagtaaatcagttttaataatttaacga 743
Query: 544 aagatacaaaggagaccacagcaatatctaagaaacacactaaactttaagtttaaatta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagatacaaaggagaccacagcaatatctaagaaacacactaaactttaagtttaaatta 803
Query: 604 naattattaatcctaaagatatattacnagtatttcaaataacaaagttaagcagaaaat 663
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 aaattattaatcctaaagatatattacaagtatttcaaataacaaagttaagcagaaaat 863
Query: 664 agaagttgagtgtattttctctgtctc 690
|||||||||||||||||||||||||||
Sbjct: 864 agaagttgagtgtattttctctgtctc 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_l24.g1 MSMg01no165_l24.g1 CHROMAT_FILE:
MSMg01no165_l24.g1 PHD_FILE: MSMg01no165_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:01 2005
(660 letters)
>mm_chr10_89648694_89649753
Length = 1060
Score = 1178 bits (609), Expect = 0.0
Identities = 652/676 (96%), Gaps = 16/676 (2%)
Strand = Plus / Minus
Query: 1 tctgggttgtgtggaagaccctgacagtcaagaatgcctgcacaaagtggaaa--gtgtg 58
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 929 tctgggttgtgtggaagaccctgacagtcaagaatgcctgcacaaaatggaaagtgtgtg 870
Query: 59 ta--------------tgtgtgtgtgtgtgatgcatgtgcaaatcgttcacacttgcagg 104
|| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 869 tacgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcatgtgcaaatcgtgcacacttgcagg 810
Query: 105 ccacaggtttacttcaggcatcttcccctatttccctctaccttgctttttaaggcaggg 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 809 ccacaggtttacttcaggcatcttcccctatttccctctaccttgctttttaagacaggg 750
Query: 165 tgtgacactgaagacataattttcttccctttcacaccactttaatggtaacaggcagcc 224
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtgacactgaagacataatttgcttccctttcacaccactttaatggtaacaggcagcc 690
Query: 225 catgtaaattcacatacatggatacacaggtatttctgaagaaagatgggatggaagtgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 catgtaaattcacatacatggatacacaggtatttctgaagaaagatgggatggaagtgg 630
Query: 285 tcacaggaataagcatctagggatctcactcatcagtgacagtgaagagtaagggaagga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcacaggaataagcatctagggatctcactcatcagtgacagtgaagagtaagggaagga 570
Query: 345 ataggagctgagttcagtgagagcaaggaaagccacagactggcagagctgaatgacaga 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtaggagctgagttcagtgagagcaaggaaagccacagactggcagagctgaatgacaga 510
Query: 405 aacccaagggatgctgtttccatggtaactaagacctagaagagtcatccaaacaaaatc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aacccaagggatgctgtttccatggtaactaagacctagaagagtcatccaaacaaaatc 450
Query: 465 ttcctgtgggaaatgggcacttggttctatgatcttgtctatgatgtgacaccttcttac 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 449 ttcctgtgggaaatgggcacttggttctatgatcttgtctatgacgtgacaccttcttac 390
Query: 525 tcagccctaagaggaatgttgaaactggagtatttatgatcaaaattaaagtctataaac 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acagccctaagaggaatgttgaaactggagtatttatgatcaaaattaaagtctataaac 330
Query: 585 tctttctacaatgtatttcattaccatgttataatgactacatggngatatgtttacttt 644
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 329 tctttctacaatgtatttcattaccatgttataatgactacatggtgatatgtttacttt 270
Query: 645 tatatctacacaaaat 660
||||||||||||||||
Sbjct: 269 tatatctacacaaaat 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
