BAC Information

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BAC

Clone NameMSMg01-166B11
Chromosome10 (Build37)
Map Location 104,494,342 - 104,494,658
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166B11.T7 (MSMg01no166_b11.b1)MSMg01-166B11.TJ (MSMg01no166_b11.g1)
ACCAG364025AG364026
length852803
length of high quality
(start - end)		37 (79 - 115)317 (77 - 393)
definitionCHROMAT_FILE: MSMg01no166_b11.b1 PHD_FILE: MSMg01no166_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:29 2005CHROMAT_FILE: MSMg01no166_b11.g1 PHD_FILE: MSMg01no166_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCATAATTTGCGNCCGCTTTACCACTCCCTATNNNNAGAGGATCCGC
GGNATTCNTANTCCTANNCTATNNNCNNTGTTTACNATCTGATATNTGTA
CTATGCATTTATGTANTTGCCNNANNAGTTTGCTTCCTATTANCNNAAGC
CTTCTAAGGNTGNNACNCNNNCNGGNNTGCNGTTTCTCTATTTGTNNAGA
GNNGGCNNATATTTTTCCCNTCNCNNTNACTTTCNTGANCNNNTTTCTNN
NAATTTNNAAAATCCCNNCCCNNCCNNTTNNNNNNCNCCNNNNNCCNNNN
NNNCNNNNNNNNNNNNCCNTCTTTTTTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNTTNNT
NNNTTAAGGAGAAGAGTATAGGAAGGCGGGGAAGGAGAGGAAGAAAGGGA
GAAGAAGGGAGAGAGGAGAGAGGAGGGGAGAAGAAAGAAGAGAGGAAGAG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGGGGTGGAGTCTAAGGAGAAAGGGGAAGAAGAGTNNNAAAGTNA
AAAAGAGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTNTNNNNTNNNNNNTNTNNNNNN
NNNNNNNNNNTNNTTTNTTTNNCNNNNNCTTCCTCTTTTNTTNTNNTNNT
NNNTNTNNNNTTNTCNNNNNCNNTNNNNNNNTTNNTNTNTTTTNNTNTTT
TTTTTTTTTTTNNTTTTCTCTTTTTTTTTTTTCGACTGCNCNNNNTACNC
CA

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCATTGTAGAAAAGTCCAGTAT
GACAGGAGGTAGGGAGGCCATGGAACAGGAAGGAGTAGGCACCGGGCTAG
TTATGCTCACCCACATTTATAAAGCAGAAAATATGTGTGGTTACAAAGCC
TCACACATTCTTACCAAACAATGGAACCAGCTGAGGATTAAGCGTTCAAA
CACGTGAGCTTATCTTTGCAGATCATTTTATATTCAAACCAAAACAAATA
GAGTATTTTGGCTCTGTTATTAAAGCTTGCTTTTTGTATTAATCAGAGGT
CTCCTGAAAATTAAAACCAATAGCATTGCTCAGGAGAGAAAAGGGAGGGA
TGGAGTGATTAATTTTTACCCCCCCCCCTTTTTATATTTATATGTATATT
TTATTTACTACTATATTTTTATACTTCTCACCTTTTCGTTTTATATTTAT
TATCTCCCTCCCCCATCATTTTTTTACATTAATTACACAATCCCCCCTCT
TTTTTCATAGCGCTTTACACAGTATTTTGTCTCCTTTTATTATATACCAT
TCATGTATAATATTAATATATTTTTTGCTCAAATCATTTACCTCCTCTTC
TTTTTTTTTTGCCTATATTCTTTCCATCCTCATCTTTTCTTTTTTTCTTC
TCTCCCCCATCCACCATCTAGAATACCCATTTATATTATTCCTTTCATTT
TTTTCTCCCTCCCATTCCGTTTCCCTTATCTTCCCCCGCGCTATCCCCCC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_b11.g1 MSMg01no166_b11.g1 CHROMAT_FILE:
MSMg01no166_b11.g1 PHD_FILE: MSMg01no166_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:29 2005
         (317 letters)



>mm_chr10_104494142_104494858
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcattgtagaaaagtccagtatgacaggaggtagggaggccatggaacaggaaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcattgtagaaaagtccagtatgacaggaggtagggaggccatggaacaggaaggagt 260

                                                                       
Query: 61  aggcaccgggctagttatgctcacccacatttataaagcagaaaatatgtgtggttacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaccgggctagttatgctcacccacatttataaagcagaaaatatgtgtggttacaa 320

                                                                       
Query: 121 agcctcacacattcttaccaaacaatggaaccagctgaggattaagcgttcaaacacgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctcacacattcttaccaaacaatggaaccagctgaggattaagcgttcaaacacgtg 380

                                                                       
Query: 181 agcttatctttgcagatcattttatattcaaaccaaaacaaatagagtattttggctctg 240
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 381 agcttatctttgcagatcattttatattcaaaccaaaataaatagtgtattttggctctg 440

                                                                       
Query: 241 ttattaaagcttgctttttgtattaatcagaggtctcctgaaaattaaaaccaatagcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattaaagcttgctttttgtattaatcagaggtctcctgaaaattaaaaccaatagcat 500

                            
Query: 301 tgctcaggagagaaaag 317
           |||||||||||||||||
Sbjct: 501 tgctcaggagagaaaag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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