BAC Information

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BAC

Clone NameMSMg01-166M14
Chromosome10 (Build37)
Map Location 22,739,467 - 22,894,330
singlet/doubletdoublet
Overlap geneEya4
Upstream geneLOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166M14.T7 (MSMg01no166_m14.b1)MSMg01-166M14.TJ (MSMg01no166_m14.g1)
ACCAG364503AG364504
length750731
length of high quality
(start - end)		314 (46 - 359)655 (77 - 731)
definitionCHROMAT_FILE: MSMg01no166_m14.b1 PHD_FILE: MSMg01no166_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:23 2005CHROMAT_FILE: MSMg01no166_m14.g1 PHD_FILE: MSMg01no166_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,739,467 - 22,739,772)(22,893,894 - 22,894,330)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGGTCATTTGCGATGCTCACATGGAACAACATCATCGCGAGG
CTCCTGAGGAATGACATTATCTCGATATTCACAACAAAGGGCATCATCTC
AATGCTCATGAGGAACGGAGTCATCATGGAGGCTCACGAGGAATGGTGTC
ATCACTATGCTCATGTGGAATGACTTCATCAAGGTACCCATGAAGAATGA
TGCCATGGAGATATTCATGAGGAAGGGCGATATGGGGATGCTCACGAGGA
ATGAAGTCATCATGAGGCTTATGAGTACCTCTTACTCATTCTGTCATTGT
CACTTTNNCTANGTTCACCTGTCANNCCCAGAGCTATGAAGGCTACTCTC
AGTTTTCTGAACGCATGGAAAAAATGAAACGGTAATATGATTTTAGACAA
TCCAGTAAATATATTAGTTAAATTAAAATGAGAATCCATACATGAGATAC
AAATTCCTGCCTGTGGTTCATAAAGTTTACTATGGGCTGCCTTGCTTGCC
TTTTCAGGCTCTGTTTGTGCTTCTGTGGGCCTTGTCCAGGATCTTCACTC
AGCCATAATTTCACTGGGTATCTTCCTGTCCCCTTCTTTCTGGGTTGCAA
CCTGAACATCTTTTTGCCATCACCTCTGTGACATTACCTGGCCTTTGTGG
TTTTCTTAACCGAATCTCTCTCTTGCCTATTTTTTTTATATACAAGATCT


CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGACATTGTTTAATGACTTTTC
ATCCTTTGGATACCACCAACGTCTCTAGTGATTGTTTGGAATTAAAAACT
ATTTGTATTGATTGTAGATTTTTCTATTTCTTCTCTCTAATGTTTCATTC
TACTGGTGTCTGCTAATTTTTCTGTTTCTAGTTTTTCAGATGAAAATGTA
CATCATAGATTTTCAGGCCCCTTTCCCTGTTGCTCACTAACCACCACCAT
ATATACTATATACCAAGCTCTGACTCGATGTATTGTCACTAGTATTTTGC
TCTATAGGCCATTTTTCATTTATTTTTGAATTTTTCTTTGACTTACATTA
GAAGATTAAATAGAAGTATAACATTTCATTAGCAAAAATTGGGGTTTTAT
ATATCATATTATCAGTTTATTTTTGAATGACTTCATTATGGTTGGATATC
ATATTCTATAAGATTTACATTTAACATCTTATTAGTATTTATCTTGTAGG
CCAGTATAGTTCTTTTGGCAATGTTCCATGTCTAATTAAAAATAGCTTAT
TTCTATAGTTATTATTAGGTCCTATAAATCATTGGTGATGATAATGCGTT
AAGTTTTTTTTTTTAATTTTATTTTGGAGTCTTTCAAAAGAATGACTTTT
GGCCGGGCAGTGATGGCGCACGCCTTTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_m14.b1 MSMg01no166_m14.b1 CHROMAT_FILE:
MSMg01no166_m14.b1 PHD_FILE: MSMg01no166_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:23 2005
         (314 letters)



>mm_chr10_22739263_22739976
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaggtcatttgcgatgctcacatggaacaacatcatcgcgaggctcctgagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaggtcatttgcgatgctcacatggaacaacatcatcgcgaggctcctgagg 264

                                                                       
Query: 65  aatgacattatctcgatattcacaacaaagggcatcatctcaatgctcatgaggaacgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgacattatctcgatattcacaacaaagggcatcatctcaatgctcatgaggaacgga 324

                                                                       
Query: 125 gtcatcatggaggctcacgaggaatggtgtcatcactatgctcatgtggaatgacttcat 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtcatcatggaggctcacgaggaatggtgtcatcactatgctcatttggaatgacttcat 384

                                                                       
Query: 185 caaggtacccatgaagaatgatgccatggagatattcatgaggaagggcgatatggggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaggtacccatgaagaatgatgccatggagatattcatgaggaagggcgatatggggat 444

                                                                       
Query: 245 gctcacgaggaatgaagtcatcatgaggcttatgagtacctcttactcattctgtcattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcacgaggaatgaagtcatcatgaggcttatgagtacctcttactcattctgtcattg 504

                 
Query: 305 tcactt 310
           ||||||
Sbjct: 505 tcactt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_m14.g1 MSMg01no166_m14.g1 CHROMAT_FILE:
MSMg01no166_m14.g1 PHD_FILE: MSMg01no166_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:23 2005
         (655 letters)



>mm_chr10_22893894_22894948
          Length = 1055

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgacattgtttaatgacttttcatcctttggataccaccaacgtctctagtgattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attgacattgtttaatgacttttcatcctttggataccaccaacgtctctagtgattgtt 378

                                                                       
Query: 61  tggaattaaaaactatttgtattgattgtagatttttctatttcttctctctaatgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggaattaaaaactatttgtattgattgtagatttttctatttcttctctctaatgtttc 318

                                                                       
Query: 121 attctactggtgtctgctaatttttctgtttctagtttttcagatgaaaatgtacatcat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attctactggtgtctactaatttttctgtttctagtttttcagatgaaaatgtacatcat 258

                                                                       
Query: 181 agattttcaggcccctttccctgttgctcactaaccaccaccatatatactatataccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agattttcaggcccctttccctgttgctcactaaccaccaccatatatactatataccaa 198

                                                                       
Query: 241 gctctgactcgatgtattgtcactagtattttgctctataggccatttttcatttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gctctgactcgatgtattgtcactagtattttgctctataggccatttttcatttatttt 138

                                                                       
Query: 301 tgaatttttctttgacttacattagaagattaaatagaagtataacatttcattagcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgaatttttctttgacttacattagaagattaaatagaagtataacatttcattagcaaa 78

                                                                       
Query: 361 aattggggttttatatatcatattatcagtttatttttgaatgacttcattatggttgga 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 77  aattggggttttatatatcatattatcattttatttttgaatgacttcattatggttgga 18

                            
Query: 421 tatcatattctataaga 437
           |||||||||||||||||
Sbjct: 17  tatcatattctataaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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