Query= MSMg01no167_c03.b1 MSMg01no167_c03.b1 CHROMAT_FILE:
MSMg01no167_c03.b1 PHD_FILE: MSMg01no167_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:49 2005
(681 letters)
>mm_chr10_31103609_31104686
Length = 1078
Score = 1152 bits (596), Expect = 0.0
Identities = 661/692 (95%), Gaps = 19/692 (2%)
Strand = Plus / Plus
Query: 5 gaattcagtaacttatctactaaacttcttcagcaatagcagtgtatgattg-cagagcc 63
|||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 191 gaattcagtaacacatgtactaaacttcttcagcaatagcagtgtatgat-gacagagcc 249
Query: 64 cttgtgccctcaccacttctaagtcctatggtactagaattagtactattactactacga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttgtgccctcaccacttctaagtcctatggtactagaattagtactattactactacga 309
Query: 124 ccacctcaggagaccagtgct--------------ggaataggagccatcaatctgttgg 169
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 ccacctcaggagaccagtgcttccatgtatctgctggaataggagccatcaatctgttgg 369
Query: 170 tagttttaaatcaagagatgagatttaggttaaagtgtcaccttcaacaccgtgaggaaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tagttttaaatcaagagatgagatttaggttaaagtgtcaccttcaacaccgtgaggaaa 429
Query: 230 ttggctattggcactctcatattctctgagtatcttttcaacccacccctgtggatttgg 289
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 430 ttggctattggcactctcatattct--gagtatcttttcaacc-acccctgtggatttgg 486
Query: 290 tactgactttgtggcctccactgactgaagctctacagacagtagattctattatatgtt 349
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 487 tactgactttgtggcctccactgactgaagctctgcagacagtagattctatgatatggt 546
Query: 350 gagatgatcataaactgtttttgaatcagtgatacactgttagcaaaaattagggaattg 409
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 547 gagatgatcataaactgtttttgaatcagtgatacactggtagcagaaattagggaattg 606
Query: 410 cagatttctttgaaatacaaaataaccttgtactatatgagtaaagtgaatatatctaac 469
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 607 cagatttctttgaaatacaaaataaccttgtactatatgagtgaagtgaatatatctaac 666
Query: 470 tatataaccagcaagggaagaaaggtatagtctttcagaaaaagcacaaaattgtcccaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatataaccagcaagggaagaaaggtatagtctttcagaaaaagcacaaaattgtcccaa 726
Query: 530 gacttaataaaagatggaatgcaataaaacagcttaaatgaaaacttactccaggcggtg 589
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 727 gacttaataaaagaaggaatgcaataaaacagcttaaatgaaaacttactctaggcggtg 786
Query: 590 gtggcgcacgccttcaatcccagcactcaggaggcagaggcagacggatttctgagttcg 649
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtggcacacgccttcaatcccagcactcaggaggcagaggcagacggatttctgagttcg 846
Query: 650 aggccagcctggtctacaaagtgagttccagg 681
||||||||||||||||||||||||||||||||
Sbjct: 847 aggccagcctggtctacaaagtgagttccagg 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1078
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1068
Effective search space: 716628
Effective search space used: 716628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_c03.g1 MSMg01no167_c03.g1 CHROMAT_FILE:
MSMg01no167_c03.g1 PHD_FILE: MSMg01no167_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:49 2005
(542 letters)
>mm_chr10_31265823_31266765
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 1 agtttgttaattctgaagcgtctgccctgtggctcttttctgagcactcatggtgctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtttgttaattctgaagcgtctgccctgtggctcttttctgagcactcatggtgctgag 684
Query: 61 cacagttcagtattcttcgtgctcacgtggacatcttttctgaaatccgtctctgtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacagttcagtattcttcgtgctcacgtggacatcttttctgaaatccgtctctgtcctt 624
Query: 121 tgaccagtatttctactgggttgattgtatttttttcactctttatattttctggttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaccagtatttctactgggttgattgtatttttttcactctttatattttctggttatg 564
Query: 181 taagacttgtcatttccgttttgtgaatatcatttcataattatgaatttctactcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taagacttgtcatttccgttttgtgaatatcatttcataattatgaatttctactcttct 504
Query: 241 ata-ttttttttggtgagtataggtttaagttaacccgtttatatgatgaatgttttccc 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatttttttttggtgagtataggtttaagttaacccgtttatatgatgaatgttttccc 444
Query: 300 atcatgtgtaagaaacactttctgttccaaaagtgttctcacgcatctttagaagcttta 359
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 443 atcatgtgtaagaaacactttctgttctaaaagtgttctcaggtatctttagaagcttta 384
Query: 360 aaagggacatctaagactaatggtggtggaagtttaagggacccagctaagttactgaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagggacatctaagactaatggtggtggaagtttaagggacccagctaagttactgaaa 324
Query: 420 cagctgtctgccagtgtagcattggtatatttagcttccctgtggaatgctttttgtttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagctgtctgccagtgtagcattggtatatttagcttccctgtggaatgctttttgtttc 264
Query: 480 atactcctggtccactgttgccggacctgtcctccagccagcaccacaatagtgtaatcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atactcctggtccactgttgccggacctgtcctccagccagcaccacaatagtgtaatcc 204
Query: 540 cgg 542
|||
Sbjct: 203 cgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
