BAC Information

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BAC

Clone NameMSMg01-167H19
Chromosome10 (Build37)
Map Location 128,424,127 - 128,424,819
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b
Downstream geneOlfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167H19.T7 (MSMg01no167_h19.b1)MSMg01-167H19.TJ (MSMg01no167_h19.g1)
ACCAG364951AG364952
length725725
length of high quality
(start - end)		680 (46 - 725)553 (77 - 629)
definitionCHROMAT_FILE: MSMg01no167_h19.b1 PHD_FILE: MSMg01no167_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:15 2005CHROMAT_FILE: MSMg01no167_h19.g1 PHD_FILE: MSMg01no167_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAGATCCCCCTACCTCTACCTCCCAAATGCTTAGATTAAAGG
TATGTACTGAAAATAATCTTTAAAAAATATATGTTTGAAACTGGAGAGAT
GACTTAGTAGGGGTGAGCACTTGCTGCTCTTTCAGAGGACCTAAGTTCAG
TTCCCAGCACCCACACAGTTCTCAACCACCCGCTACTTCAGATCTACAGG
AGCTGTGCCCTCTTCTGACCTACACACACACACATGAGTATGATCAATCA
CGTGGTTAAAAGCACCATAATTATTCTATCACACCTATTTTTTGCAGAGT
TAGCTCATAAATCAAAACAGAACTTTAAAAATTTAATAAATCAATTTCAA
GTAGTCATCTAGCTCTTTAGTTTTAGTTTTTATGACAATACTTTTCTAAG
AGTCCTATTTAATGTTGACATTTTAGGAAGAAAATATTACACTGTATTCA
ACACATTTTCAAGTAACTTAGAACATGAAAGAGAGAGAAAGCAGAAATTG
ATGAACTCAAACTGGTGTTGAATGTTTGTGGGACTATTTTATTATTTTTG
CAAGTTTGAACAAAAGTGTTATGAAATGATAACAATAATAATAATAATAA
ATATTTTGACTATGTAAGAATTCCAAGCTGGAGCCAGACCTGATGATGCA
CACCTTTAACCCCAATACTTGGGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGATCTGTCTGTCTCTCTCA
GTGCTTGGTTTAAAGGCAAGTGCCACCTCTCCTGGCCAATTTTGGGTTTT
TAATGCCTTAAAAAAACACTCTCGACAGGCGTGGTGGCGCACACCTTTAA
TCCCAGCACTGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAG
CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC
CTGTCTTGAAAAACAAAACATTAACAAAAAAAAAAAACACTCTCAAGTTG
AGTGGTGGTACATGCCTTTAATCCCAGCACTCAAGAAGCAGAGACAAATG
ATTCTCTGTGAGTTTAACCCCAGTCAAGTTCTAGGATAGCCTAAGGACAC
AGAGAAACCCTGACTCGAAAAACCAAAAACAACAACAACAACAACAAAAC
AAAACAAATAAAAAACCTCTTTCCAAGCTGGGCATAGTAGTGCATGTCTC
TAGTCCTAGCACTCAGGAGACAGAGGCAGGTGAATTTCTGTGAGTTGCAG
GCTAGCTTGGTCTACATAGTGAGTTCCAGGACAGCCAGGGTGACATGGAA
AGATCCTTGTCTCAAAACAACAAAAAACAAACTCTTTCCATTTTTTATAA
AGAGAAATTGGCGACTTTAGTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_h19.b1 MSMg01no167_h19.b1 CHROMAT_FILE:
MSMg01no167_h19.b1 PHD_FILE: MSMg01no167_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:15 2005
         (680 letters)



>mm_chr10_128423784_128424863
          Length = 1080

 Score = 1094 bits (566), Expect = 0.0
 Identities = 653/696 (93%), Gaps = 23/696 (3%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcacagagatccccctacctctacctcccaaatgcttagattaaaggtatgtactg 64
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gaattcacagagatctccctacctctacctcccaaatgcttagattaaaggtatgtactg 977

                                                                        
Query: 65   aaaataatctttaaaaaatatatgtttgaaactggagagatgacttagtaggggtgagca 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  aaaataatctttaaaaaatatatgtttgaaactggagagatgacttagtaggggtgagca 917

                                                                        
Query: 125  cttgctgctctttcagaggacctaagttcagttcccagcacccacacagttctcaaccac 184
            |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 916  cttgctgctctttcagaggaactaagttcagtttccagcacccacacagttctcaaccac 857

                                                                        
Query: 185  ccgctacttcagatctacaggagctgtgccctcttctgacct------------------ 226
            |||||||||||||||||| |||||| |||||||||||| |||                  
Sbjct: 856  ccgctacttcagatctacgggagctatgccctcttctggcctacacacacacacacacac 797

                                                                        
Query: 227  --acacacacacacatgagtatgatcaatcacgtggttaaaagcaccataattattctat 284
              ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 796  acacacacacacacacgagtacgatcaatcacatggttaaaagcaccataattattctat 737

                                                                        
Query: 285  cacacctattttttgcagagttagctcataaatcaaaacagaactttaaaaatttaataa 344
            |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 736  cacacctattttttgcagagttagctcacagaccaaaacagaactttaaaaatttaataa 677

                                                                        
Query: 345  atcaatttcaagtagtcatctagctctttagttttagtttttatgacaatacttttctaa 404
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  atcaatttcaagtagttatctagctctttagttttagtttttatgacaatacttttctaa 617

                                                                        
Query: 405  gagtcctatttaatgttgacattttaggaagaaaatattacactgtattcaacacatttt 464
            ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 616  gagtcctatttaatgttgacattttaggaagaaaatactacactgtattcagcacatttt 557

                                                                        
Query: 465  caagtaacttagaacatgaaagagagagaaagcagaaattgatgaactcaaactggtgtt 524
            |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 556  caagtaacttagaatatgaaagagagagaaagcaaaaattgattaactcaaactggtgtt 497

                                                                        
Query: 525  gaatgtttgtgggactattttattatttttgcaagtttgaacaaaagtgttatgaaatga 584
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  gaatgtttgtggaactattttattatttttgcaagtttgaacaaaagtgttatgaaatga 437

                                                                        
Query: 585  taacaataataataataataaatattttgactatgtaagaattccaagctggagccagac 644
            |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  taa---taataataataataaatattttgactatgtaagaattccaagctggagccagac 380

                                                
Query: 645  ctgatgatgcacacctttaaccccaatacttgggag 680
            |||||| |||||||||||||||||||||||||||||
Sbjct: 379  ctgatggtgcacacctttaaccccaatacttgggag 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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