BAC Information

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BAC

Clone NameMSMg01-168B19
Chromosome10 (Build37)
Map Location 81,038,622 - 81,038,906
singlet/doubletsinglet
Overlap geneTle2
Upstream geneKlf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes
Downstream geneTle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B19.T7 (MSMg01no168_b19.b1)MSMg01-168B19.TJ (MSMg01no168_b19.g1)
ACCAG365399AG365400
length712729
length of high quality
(start - end)		318 (45 - 362)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no168_b19.b1 PHD_FILE: MSMg01no168_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:06 2005CHROMAT_FILE: MSMg01no168_b19.g1 PHD_FILE: MSMg01no168_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAACTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGAACAAGGGTTA
CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAATAATTCTACCAGAGAACTCCTAAACCTGA
TAAACAGCTTCGTTTAAGTAGCTCCCCACCCCATTAACTCAAACAAGTCA
ATGGCCTTTCTCTACCAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGTGTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTAA
TGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGATTCAATGCAATCCCCCATCAAAATTCCAACTCAATTCTTCAAC
GAATTAGAAAGG

NCGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCTTCAAGCTCAGTACC
ACAGGTGAGGGAGCCCTAGTTCTGGGCCCTGGGAAGCCCCATGGGGGTGA
GCGGGGACTCTTGGAGGGGCGTGGTTTCTAGGGCAAGGGGCGGGGCTCAT
TGGGCCTACTGGAGGGCTTTCTGGTGGAGGTGGTGCCCAGAAGAGTGTGA
GATGAATGGATTCAGGGAAAGCCTTCCCTGAGAATGTTTTGGTCCCAGGA
GTAGATCTGGGCTCGAGAGGACTGGTTTTAGTTTCTAAAGGAATGGGGAG
CCAGCAGCTTCTGTTGGTCATTGCCCCAACCGANNCCCGTGGGGTGTGTT
AAGTTAATTNTAATTTTTGTCCCCCCTTCAAGAAAAAAAACAAGCTGGGG
GGGGGGAAGTTGGCCACCGTGTACACAGAAATGTAATGGGATTATGGGAT
GGTAAGCAGATCTTGCCCATTCTGATCACTTCCGCGCTTTCCCTAAATCG
GGCTCCCCTTACCCCTCCCTCCCCGCTTCGTAGAGTTCCCCCCCCGCTGC
CATTTTTTACCATTAACAGTTTTTCATGTCCCCCGCCGCCTTTTATTCTT
TGATCACCCCTCGGCGTCTTATACTTACTTAACCCCCCCACCAAACTTTA
CGCCCTTTCTTTTACCTCTGCCTCCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b19.g1 MSMg01no168_b19.g1 CHROMAT_FILE:
MSMg01no168_b19.g1 PHD_FILE: MSMg01no168_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:06 2005
         (286 letters)



>mm_chr10_81038422_81039107
          Length = 686

 Score =  520 bits (269), Expect = e-152
 Identities = 281/289 (97%), Gaps = 8/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttcttcaagctcagtaccacaggtgagggagccctagttctgggccctgggaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttcttcaagctcagtaccacaggtgagggagccctagttctgggccctgggaagcc 260

                                                                       
Query: 61  ccatgggggtgagcggggactcttggaggggcgtggtttctagggcaaggggcggggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgggggtgagcggggactcttggaggggcgtggtttctagggcaaggggcggggctc 320

                                                                       
Query: 121 attgggcctactggagggctttctggtggaggtggtgcccagaagagtgtgagatgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgggcctactggagggctttctggtggaggtggtgcccagaagagtgtgagatgaatg 380

                                                                       
Query: 181 gattcagggaaagccttccctgagaatgttttggtcccaggagtagatctgggctcgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcagggaaagccttccctgagaatgttttggtcccaggagtagatctgggctcgaga 440

                                                            
Query: 241 ggactggtttt----agtttctaaaggaatggggagccagcagcttctg 285
           |||||||        ||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactgg----gaacagtttctaaaggaatggggagccagcagcttctg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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