BAC Information

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BAC

Clone NameMSMg01-169I06
Chromosome10 (Build37)
Map Location 116,369,622 - 116,369,920
singlet/doubletsinglet
Overlap geneRab3ip
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
Downstream geneD630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I06.T7 (MSMg01no169_i06.b1)MSMg01-169I06.TJ (MSMg01no169_i06.g1)
ACCAG366364AG366365
length701916
length of high quality
(start - end)
323 (37 - 359)---
definitionCHROMAT_FILE: MSMg01no169_i06.b1 PHD_FILE: MSMg01no169_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:13 2005CHROMAT_FILE: MSMg01no169_i06.g1 PHD_FILE: MSMg01no169_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTT
AAGCTGCCGAGAACAGGTTCGTATCCTGCCAGTCTGGGTTTCCATTTCAA
TACCTCATACAGAGCCACGCTTTTGAAGGTATGTCACCTAGTAACTAAAA
TCAACAATAAAGCACTCAACTCAACAAGGTTAGCAGAGGCAGCACTGACT
AAGCTCATGCATAGGGAGGCCCCTCAACCGTCCTGTTGCTGTCTAACTGG
CAGCAGTGTTAAGACCCATGTCGACCTCAGATGTTAGGAAGAAAGACAGT
GCGGAGTCACTGAGGTACATTTACGCCTGTTCTGTCCAACTACTAAGTGT
TCTTAATTTATTGTGCCCCACCTCCTGAGACCAGGCCTCACTCTAGTTCA
GAGTTGCCTCTAATTCACTGTGTAGACCAGATTGACCTCAAATTCACAGC
AATCCTCCTGCCTCGGTGTTCTGAGTGCTAAGATTAGACATACACCCCCA
AACTCTGCCATGGCAAACAAGCACGGGGTCCTGTCTGGTTTATTCCTGCA
AACTACAAAGTCAAAAACAGGTTAATGAAATAGCCTCAAAAATGTTTATC
TTTCTTGTCTACAGTTATTACAGTAGGGCCATGTTAACCACAGGGAGCAG
TGACCCTTGAGGAGTCTCTCTGGCTGCAAGCTCTCCTGCCCAGTTTACTT
A
CCTTTTTCCTCCCCCTTCCACTTTTATTTTTTCCTTTTTNGNNNNCCTCT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCGACTCGCACAC
TCTTCTAGCGCCTGGTTACACCTAATAGTAAGGCATCCCGTCGGAAAAAT
TCCAGTCTTACAGGCCTAAANTCTTTATTTTTTAATGTCTTAATCTGAAC
GACCCCTTCCCTTTTCAAAAAAGCCCTTTTTGGTCTTGTTAGGCCCCAAG
TGCAACCCCTGTCCCCACCTCAAGTCAAAATGGTAAAGCCCCCCTTTGGC
CTTTTTTTTGGGTGAAAAAATTAACAAATAAACTTTTCCCTCGGAAATTT
AAACCTTCCCTTTTTTTTTATAACCCCCCCGGAAAAATTTGGGAGGCCCC
CCCCAAAAACTACATGGGGAAACATAAAATGGGCGCGCCTCGCCCCTTTA
TAAAAGATAAAATTTTCCCACCCAATACGAGGAGATATTCTTTTTCCCCA
ACATTCCCACACCTATAGGTGTTCAATTATAAATAAAAAAAAAAACATAC
TTTTCGAATTCATATACTCTTNTNTAGAGTATGTACAGAGAGCGCGCCCC
GTAATATGTTATTAGCCCCCCACCCCTACCCATAATTCTACAATTCTCCC
TACTCTCCTCCCTATCTATTTATCTATAACNCTCGACTTTATATTTACGC
AAAACGGATTGGTGGTTTGTGTTGTTTTCCCCCCTTCTTCTTATTTTTTA
TAGGTCTAGACATCACCCTATTTGTATTCTTCTTTTTCTTATTCCCATCC
TTTTTTATTTTCTGTCCATCCATGAGCAGATAACCAGATTCATATACGAC
ACGGTGGGCGTTTTTTGGAGTGGANATTTTTTCCCCAAGAGGAATACTAG
AAATGTCCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i06.b1 MSMg01no169_i06.b1 CHROMAT_FILE:
MSMg01no169_i06.b1 PHD_FILE: MSMg01no169_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:13 2005
         (323 letters)



>mm_chr10_116369418_116370140
          Length = 723

 Score =  474 bits (245), Expect = e-138
 Identities = 291/319 (91%), Gaps = 20/319 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaagctgccgagaacaggttcgtatcctgccagtctgggtttccatttcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaagctgccgagaacaggttcgtatcctgccagtctgggtttccatttcaa 264

                                                                       
Query: 65  tacctcatacagagccacgcttttgaaggtatgtcacctagtaactaaaatcaacaataa 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacctcatacagagagacgcttttgaaggtatgtcacctagtaactaaaatcaacaataa 324

                                                                       
Query: 125 agcactcaactcaacaaggttagcagaggcagcactgactaagctcatgcatagggaggc 184
           |||||||||                    |||||||||| |||||| |||||||||||||
Sbjct: 325 agcactcaa--------------------cagcactgaccaagctcgtgcatagggaggc 364

                                                                       
Query: 185 ccctcaaccgtcctgttgctgtctaactggcagcagtgttaagacccatgtcgacctcag 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccctcaaccgtcctgtagctgtctaactggcagcagtgttaagacccatgtcgacctcag 424

                                                                       
Query: 245 atgttaggaagaaagacagtgcggagtcactgaggtacatttacgcctgttctgtccaac 304
           ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||
Sbjct: 425 atgttaggaagaaagacagtgcggagtcactgaggcacatttacatctgttctgtccaac 484

                              
Query: 305 tactaagtgttcttaattt 323
           |||||||||||||||||||
Sbjct: 485 tactaagtgttcttaattt 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)