BAC Information

Click to search

BAC

Clone NameMSMg01-169L01
Chromosome10 (Build37)
Map Location 53,169,562 - 53,169,846
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629689, Zfa, Slc35f1, Pln
Downstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L01.T7 (MSMg01no169_l01.b1)MSMg01-169L01.TJ (MSMg01no169_l01.g1)
ACCAG366485AG366486
length690734
length of high quality
(start - end)
326 (12 - 337)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no169_l01.b1 PHD_FILE: MSMg01no169_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005CHROMAT_FILE: MSMg01no169_l01.g1 PHD_FILE: MSMg01no169_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATATGGAGAGGATCCGCGGAATTCTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGCAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAG
GATCCAGCAATACCACTCCTGGGCATATATCCAGAATATGCCCCAACTGC
GCCCCAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAGATGTGGCACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTGGCCAAATGGATGGAACTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCCCAAAGGAACTCACACAATATGTACTCACT
GATAAGCGCATATTAGCCTCACCCCTATGATTACCCATGATATAAGATTC
AATTTCCCTAAACACATGCAACTCACGAAAAATGATAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTCATTCTTCTCTATTTGAC
CCAGCATTAAATTCCCCTGTCTTTATTTTGACCATCATTTTACCCATTGG
TCATCTGGGGCCATGCTCATTGACAACTGTCGATAGTGATCTCCCAGTGA
TGGGTTTCAAGGATCTCTTAAAAGCACTCAGGGAAAGAGAATAAGAGGGA
CATGGAATCGATGTTGGAGACCCAAGTTGTAATTGGAGAAAGGAAGGCAG
GAGGAAAAATTGGATACCTATGTCTGACCTCAAGAGCGAAAGTGGAGATG
TGAGGAGAAGCTGTGGAGGCAAGGCATCTCAGTGTGGCTGAACACTGGGC
AAGAGCGAGCAGAAAGACAACCGTGTGTGCTGAGCAAGGGCAAGCGGAGA
GACTGACCTTGTGTGCTGAGCAAGGGCGAGCAGAGAGACTAACCTTGGGT
CTCCTTTATCCTTACCTAGTATGTTCCTTTTGTGTCCTGTGACTTGCTAG
GGTGAAATAGACCTCAGGAGGCATTATTGACAGAGCTGTCAGATCTTTAA
AGACACGGTTATAAATTAGATTTGCTCTTGTTATTATCCAATTCTTCTTA
TACAGAAGTGTCCTAGGTGAGGTTCTATTGCTGCGATAAAGAACATGACC
AAACATAACCAGGAAGGAAAGGGTTTGTTTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l01.g1 MSMg01no169_l01.g1 CHROMAT_FILE:
MSMg01no169_l01.g1 PHD_FILE: MSMg01no169_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:27 2005
         (286 letters)



>mm_chr10_53169362_53170047
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccctcattcttctctatttgacccagcattaaattcccctgtctttattttgaccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agccctcattcttctctatttgacccagcattaaattcccctgtctttattttgaccatc 426

                                                                       
Query: 61  attttacccattggtcatctggggccatgctcattgacaactgtcgatagtgatctccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attttacccattggtcatctggggccatgctcattgacaactgtcgatagtgatctccca 366

                                                                       
Query: 121 gtgatgggtttcaaggatctcttaaaagcactcagggaaagagaataagagggacatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 365 gtgatgggtttcaaggatctcttaaaagcactcagggaaagagaataagagggacttgga 306

                                                                       
Query: 181 atcgatgttggagacccaagttgtaattggagaaaggaaggcaggaggaaaaattggata 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 atcgatgttggagacccaagttgtaattgaagaaaggaaggcaggaggaaaaattggata 246

                                                        
Query: 241 cctatgtctgacctcaagagcgaaagtggagatgtgaggagaagc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctatgtctgacctcaagagcgaaagtggagatgtgaggagaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)