BAC Information

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BAC

Clone NameMSMg01-169L06
Chromosome10 (Build37)
Map Location 126,753,690 - 126,753,999
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075
Downstream geneArhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L06.T7 (MSMg01no169_l06.b1)MSMg01-169L06.TJ (MSMg01no169_l06.g1)
ACCAG366494AG366495
length721721
length of high quality
(start - end)		314 (46 - 359)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no169_l06.b1 PHD_FILE: MSMg01no169_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:28 2005CHROMAT_FILE: MSMg01no169_l06.g1 PHD_FILE: MSMg01no169_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCTAGGACTATACAGAGAAACACTGTCTCAAAAAAAAA
AAAAATGGTGTCTGACTATGTAGACCTGGCTAACCTGGAGCTCACTCTGT
TGACCAGACTGGCCTCAAACTCACAGAAATCTGCCTGCCTCTGCTATCTG
GGTGCTGGGGTTAAACCCACCACACCAGCCTAGCCCTTGAATTTTTAGGA
AGGGTCTTGCTATGTGGCTCAGGACTGAAGAAACCACTCGCTCAGCAGTT
AAAAGCATTGGCCGTTCAGTTCCCACGTAGTGGCTTTTCATCACCCTTTG
TAACTTCATTTTCAGAAATCCCACACTCTCTTCTGACCTCTATGGGGCAC
CAAGTACTCATGTGGTGCAGACACTCACATGCAATCGAAACATCTATACA
CATAGCACTTATCCTAAGGAGGAAAATATTATTTTGAGATAGGGTTGCAC
GTAGCCCAGGCTGGCCTTGAACTGACTATGTAGGTGAAAATGACCTTTAA
CTCCTGATGCTTCTGTACCCCAAGTTTTGGAACTCTAGGCTTATACAGTG
TCTGGCTTTCCTAATTTTATAAACGTGTGTGAGTGTACATGAGTGCTGGA
AACCAAACCCTGACCTTCTGCAAGAACAAACGCTCTTAGCCAGTGAGCCA
CGGCTCCAGTCCCCATAATTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACCTGAAACTGTAATCCAGCTC
AAAAGCCCATTGCTAAAGCCAGCACTCTACAGGCAGAGGCTGATAGGTTT
CTGTCAATTCGAGGCCAGCCTGGCCTTCATAATAAGTTCCTACAAAACAG
GAAAGTCAGGGCTACATGATGAGACCCTAGGGTGAAACCTGCTCAATGGA
CATGTCTTCCACTGCATTCTAAATATTTATATTTATAGGCCTGAGCTTCT
CCCAACCTTGGCCAGAGGATCTTCTTTTTAAGCGGGTTATCAGTTAAGTG
CAGAGATTTGTTAATTATGGATAGNATTACCCCCCCCCCCCTGTATGCTC
ATCCCTAAATGGGACATTTGTGTCAAACCCCCCACACAAAACTCCAGACT
CAGGGAACCTTGAGGAAGAGGAACAGAAGATGTACGAGCTGGAGGATAGG
GAGAACTGTGAAATGCTTGCTGTCTTCTGGCTATGACTTGTCTGTCTCAC
TCAGAGCTCACAGCAGCTCCTATCACCCCAGTAAAGGCAACAGGAGCTCT
GGTTGTTTGAGGCTAGCCTGGTCTACATAGTGAGTTCCTGGCCAGTCAGT
GCTACATAGTAAGATCCTGTCTCAAACAGAAAGAACCAAAACACCCAAAC
AAGCTTTGGGCGGAGAGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l06.b1 MSMg01no169_l06.b1 CHROMAT_FILE:
MSMg01no169_l06.b1 PHD_FILE: MSMg01no169_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:28 2005
         (314 letters)



>mm_chr10_126753309_126754022
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagctaggactatacagagaaacactgtctc-aaaaaaaaaaaaaatgg 63
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 691 gaattccaggacagctaggactatacagagaaaccctgtctcaaaaaaaaaaaaaaatgg 632

                                                                       
Query: 64  tgtctgactatgtagacctggctaacctggagctcactctgttgaccagactggcctcaa 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtctcactatgtagacctggctaacctggagctcactctgttgaccagactggcctcaa 572

                                                                       
Query: 124 actcacagaaatctgcctgcctctgctatctgggtgctggggttaaacccaccacaccag 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 571 actcacagaaatctgcctgcctctgctatctgggtgcttgggttaaacccaccacaccag 512

                                                                       
Query: 184 cctagcccttgaatttttaggaagggtcttgctatgtggctcaggactgaagaaaccact 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cctagcccttgaaattttaggaagggtcttgctatgtggctcaggactgaagaaaccact 452

                                                                       
Query: 244 cgctcagcagttaaaagcattggccgttcagttcccacgtagtggcttttcatcaccctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cgctcagcagttaaaagcattggccgttcagttcccacgtagtggcttttcatcaccctt 392

                     
Query: 304 tgtaacttca 313
           ||||||||||
Sbjct: 391 tgtaacttca 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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