BAC Information

Click to search

BAC

Clone NameMSMg01-169O21
Chromosome10 (Build37)
Map Location 28,523,317 - 28,523,544
singlet/doubletsinglet
Overlap geneE430004N04Rik
Upstream geneLOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O21.T7 (MSMg01no169_o21.b1)MSMg01-169O21.TJ (MSMg01no169_o21.g1)
ACCAG366652AG366653
length707699
length of high quality
(start - end)
236 (438 - 673)228 (439 - 666)
definitionCHROMAT_FILE: MSMg01no169_o21.b1 PHD_FILE: MSMg01no169_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:45 2005CHROMAT_FILE: MSMg01no169_o21.g1 PHD_FILE: MSMg01no169_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGC
GGAATTCCTGTTTTCAAGGAAGTGACTAAGATTTTCTTCTTTAGGCTCTC
TGCTCCTCCCTGTTCCAGAGACAGCCGCATCTTCTTGTGCAGTGCCAGCC
TCGTCCCGTATACAAAATGGTGAAGGTCGGTGTGAACGGATTTGGCCTCA
TTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGATT
GTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTT
CCAGTATGACTCCACCCATGTTTAGTTCAACGGCACAGTCAAGGCCGAGA
ATGGGAATTTNGTCANTACGCGNAAGCCATNCCCATCTTCCAGGAGCGAG
ACCCCACTAACATCAAATGGGAAGAAAAAAAAACTGAGTATGTCGGGGAG
TCTACTGGTGTCTTCACCACCATGGAGAAGGCCGGGGCCCACTTGAAGGG
TGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGT
TTGTGATGGGTGTGAACCACGAGAAATATGACAACTCACTCAAGATTGTC
AGCAATGCATCCTGTACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCAT
CCATGACAGCTTTGGCATTGTGGAAGGGCTCATGACCACAGTTCATGCCA
TCACTGN
CGATGAAGTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAAATTACGGATAGGCAGTCCCATA
CTGGCCTAATTTCAGACATGACTCGGTCTGATATTTATCACATGAAAGGA
ATTCAGGCGCAAAAACATTACAATGTCTCTGCTAAATTACAAATAATCAA
CTGAAGGGATGGCCACTCTTCTCTTACTTATTCAAATATCAGTGCCTTAG
AAACACTAACAAAACCAGAATAGAATAAACATAAAAATACCTTTAGTGAG
TTATTTTTATAGGAGAGGATTAATGACTGTTTCTCATAAATAATGTATTA
CTACATATTCTTATTTTTTTTTTGCCCTTACTANCCCCCTCATTCATGGA
GGTCTATAGTTCCATCAACAGGCTTGATGTAAAAATGAAGGCACTGAAGG
AGGCCTATCCTCTAATACCCAAATGCCCTTGGTGAGGGTGGAGTCTCTTA
AACAGCTTTGACAATAAAATGTAAATATTCCACAATAATATCAACAACTT
TGACAGCTGTAAGTAGCCCATTAGACACTTCACTTTTTTTATTTGTAACC
TGTGATGTCCATCTTTACAGTACACTTCTGTGCACAACATTGAAAGTGTA
ATGTTGCGAGCGTGTGGGGGATTTTTGGGATAGCATTGCGAATGTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o21.g1 MSMg01no169_o21.g1 CHROMAT_FILE:
MSMg01no169_o21.g1 PHD_FILE: MSMg01no169_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:45 2005
         (228 letters)



>mm_chr10_28523117_28523744
          Length = 628

 Score =  410 bits (212), Expect = e-119
 Identities = 224/228 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcactgaaggaggcctatcctctaatacccaaatgcccttggtgagggtggagtctct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 428 aggcactgaaggagtcctatcctctaatacccaaatgcccttggtgagggtggggtctct 369

                                                                       
Query: 61  taaacagctttgacaataaaatgtaaatattccacaataatatcaacaactttgacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaacagctttgacaataaaatgtaaatattccacaataatatcaacaactttgacagct 309

                                                                       
Query: 121 gtaagtagcccattagacacttcactttttttatttgtaacctgtgatgtccatctttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 308 gtaagtagcccattagacacttcactttttttatttgtaacctgtgatgtccatctttaa 249

                                                           
Query: 181 agtacacttctgtgcacaacattgaaagtgtaatgttgcgagcgtgtg 228
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 agtacacttctgtgcacaacattgaaagtgtaatgttgggagcgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)