BAC Information

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BAC

Clone NameMSMg01-170E14
Chromosome10 (Build37)
Map Location 27,137,898 - 27,308,591
singlet/doubletdoublet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170E14.T7 (MSMg01no170_e14.b1)MSMg01-170E14.TJ (MSMg01no170_e14.g1)
ACCAG366905AG366906
length727732
length of high quality
(start - end)
314 (44 - 357)228 (85 - 312)
definitionCHROMAT_FILE: MSMg01no170_e14.b1 PHD_FILE: MSMg01no170_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:12 2005CHROMAT_FILE: MSMg01no170_e14.g1 PHD_FILE: MSMg01no170_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,308,283 - 27,308,591)(27,137,898 - 27,138,125)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTGAGTCTGCAGTAGTTGAGTAGAAAGATCGTGAAAGGTGACAT
GGGGGTCTAGTTATATTAGTTACCTTTTTTAACGTGACATTCAGACTTAG
TTCCTGGATTTTTAAGAATGTCTGGGAACCATGAGATGGATAATCCTTGC
ACTAGTAATTGTAGCAGAGGATGATTTCTTTCATTTTCTCTTTTATCGGA
TATTTTCTTTATCTACATTTCAAATGTTATCCCCTTTCCAGGTCTCCCCT
CAGGAAACTCCTTATCTTTTTTTTCATCCCCCTGCCTCTATGAGGGGNCT
CCCCTATTTTTGGTGTTTTCCCAANACAAACCCCCNGGNNATNNGNNANA
GNGGGGNGNNGAANNNNCACAAGNNNNAAGGNNNAAACGCGGGGGGAGGG
CGAACAAGGCCACCNCCGGCCACGNACGAGGCCAGAGCNAGGGGNCCCNC
CAGGCGTANNCNNNGGNNGGGAGCNGGGAGNCCCAGGGAGCNGGGGGGGC
GGGGGCGGCCNNNCCCCNANCCCNCNCCNNGNCNCGCGGCCCGCCCCGGN
GNNGGCCGCGCGGGCCCCGCCGGGGCCGGGGCGGGAGGCGGGGNGGCCGG
GGNGGCGGCCCCCGGNCCCCGCCCGGCCCCGCGCCCNNCCGCGGGCCGNG
GGGGCCCCCCCCGGCAAGACGCCCCCT
TCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTCTGACTAAAG
GAAAGCAAATTCCTGCTGAGTCCTCTCAGCACTGATGATACAAAATTACC
TTTTTCTAAAATTAAACTCCAAAGGCTTTTTCCTCAAAGCCTCCCATGGT
TTTCAGCCGGGATAACAACACACTGGTTATCTTCCCATGGTCATCCCTCT
CCCTCCATGCCAAGCCGAAATACTTGATGTGCCAGGGTTACCACAGTTCA
CAGGGAGCTACTCTGCTCCCTTGGGATTCAAACCCAGCATGAAAAACTAA
TCTCTTTCTGGTAATTATTTGAACCTTGTTATCTTGGGAACTTAGGGAAA
CCCTGAAGTTCCGTCACAGAGAAAAAACAAGAAAAATATTTTTGATCTCT
TGAAACTCATGTAAAGGGTGCTGAGAAAATTCAAAGAAGGTAGTGAGTGA
GTCGGTTGCTGAAGCAACAAAGTCCAAGAAAACAGTGGGCATGATGTACC
CAACGGAAAAGATGTCAGAAAAAGAATTCTGCAGCCATGATTCCAACAAA
GGCAAAAGCCAGAACCCATTTTGTGTGCATAGAGGTCAGACTAAAAATCC
AATCTTTACAATATTAAGGCTGAATTGCACCACCTATTTTTTAACCCGGA
AGCGGCGAATTATTCTACCTGCCCTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_e14.b1 MSMg01no170_e14.b1 CHROMAT_FILE:
MSMg01no170_e14.b1 PHD_FILE: MSMg01no170_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:12 2005
         (314 letters)



>mm_chr10_27308202_27308915
          Length = 714

 Score =  507 bits (262), Expect = e-148
 Identities = 297/315 (94%), Gaps = 12/315 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctgagtctgcagtagttgagtagaaagatcgtgaaaggtgacatgggggtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattccttctgagtctgcagtagttgagtagaaagatcgtgaaaggtgacatgggggtc 331

                                                                       
Query: 65  tagttatattagttaccttttttaacgtgacattcagacttagttcctggatttttaaga 124
           |||||||||||||||  ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 330 tagttatattagttatattttttaacatgacattcagacttagttcctggatttgtaaga 271

                                                                       
Query: 125 atgtctgggaaccatgagatggataatccttgcactagtaattgtagcagaggatgattt 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 270 atgtctgggaaccatgagatggataatccttgcactaataattgtagcagaggatgattt 211

                                                                       
Query: 185 ctttcattttctcttttatcggatattttctttatctacatttcaaatgttatccccttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctttcattttctcttttatcggatattttctttatctacatttcaaatgttatccccttt 151

                                                                       
Query: 245 ccaggtctcccctcaggaaactccttatcttttttt--t----catccccctgcctctat 298
           |||||||||||||||||||||||||||||      |  |    |||||||||||||||||
Sbjct: 150 ccaggtctcccctcaggaaactccttatc------tcataccccatccccctgcctctat 97

                          
Query: 299 gaggggnctccccta 313
           |||||| ||||||||
Sbjct: 96  gaggggtctccccta 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_e14.g1 MSMg01no170_e14.g1 CHROMAT_FILE:
MSMg01no170_e14.g1 PHD_FILE: MSMg01no170_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:12 2005
         (228 letters)



>mm_chr10_27137698_27138325
          Length = 628

 Score =  387 bits (200), Expect = e-112
 Identities = 221/228 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctctgactaaaggaaagcaaattcctgctgagtcctctcagcactgatgatacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctctgactaaaggaaagcaaattcctgctgagtcctctcagcactgatgatacaaa 260

                                                                       
Query: 61  attacctttttctaaaattaaactccaaaggctttttcctcaaagcctcccatggttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacctttttctaaaattaaactccaaaggctttttcctcaaagcctcccatggttttc 320

                                                                       
Query: 121 agccgggataacaacacactggttatcttcccatggtcatccctctccctccatgccaag 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agccgggataacaacacactggttatctccccatggtcatccctctccctccatgccaag 380

                                                           
Query: 181 ccgaaatacttgatgtgccagggttaccacagttcacagggagctact 228
           ||  ||||||||||||||||| |||| ||||| |||||| ||||||||
Sbjct: 381 ccctaatacttgatgtgccagtgttatcacagctcacagtgagctact 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)