BAC Information

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BAC

Clone NameMSMg01-170G02
Chromosome10 (Build37)
Map Location 72,268,208 - 72,268,517
singlet/doubletsinglet
Overlap genenone
Upstream gene1700049L16Rik, LOC100040505, Zwint
Downstream geneLOC432471, LOC544705, LOC100039981, LOC623191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170G02.T7 (MSMg01no170_g02.b1)MSMg01-170G02.TJ (MSMg01no170_g02.g1)
ACCAG366965AG366966
length714711
length of high quality
(start - end)
315 (45 - 359)269 (79 - 347)
definitionCHROMAT_FILE: MSMg01no170_g02.b1 PHD_FILE: MSMg01no170_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:18 2005CHROMAT_FILE: MSMg01no170_g02.g1 PHD_FILE: MSMg01no170_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTGCAGTGAACTTCTACTGTAAGAAACTTTAAGTCAGTCTTTCA
GAAGGAATGTATCAACAGAGCCACACAGAGAGAACATAGGACGCCAAGAG
ACTCTGAGGCTACCTAACAACAGAAGATACATTTTATATTCAAATTGTTT
AAAATGTCATACACATGCCTATTCATGCATTTCCGGGCTTGGGTGTATGA
ATAGTAAGACCTCTAATATCAGTAGCAAAAGAGCTCTCAGAAAGAGAAAA
ATTGAAACTCCAATTTTTTCAAATGCCTTTATTGAAACACAATGACATCT
AAAAGCAATTAGTTAGTTTCTCCCCGTCCTTGCCCACAAACCCTCATCTA
CGCTGGCTGCTTCAGCAAGATATCATGAACCAGGATTATACNCAACAGAC
TTTCATGTCTGAGTTCTAGAGACGGGAAAAGTAGGGATCAAGAACCCACC
CATAGCTGTAGGTAAAGGTTGGCTCTTTGTTTAACTAAGCTTTACTCTCA
TGGTGGAAGCACTGAGGGAATGCCTGCTGTGAGTTTCTGAGGAATTTAAC
CCCATTCATGAAGGTTTATGAAAGGAACTTTGATTATAGCCTTCCTACAA
CTTCATGTGGAATATTTATTTTTCTGGCTATAGAAATTAATTTTTAACAG
GATGAAGACTTATC
AAGTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAGGAAAGATTCCTGCTA
TTAATATGCTTTTCCTGTTATTATTAAACATATATGACAATCACTAAGTA
ATAGCACACCTCTTTGGAGCAGATCTCTGCAGATCCACAAAGATGTACTA
TCTTGAAGATGTTATATAGACAAATAGATGACTTTTTAGGTTTTAATGAT
GATCCTATAAAAATTCCTAAAATTATATTAGCCATTATTAAGTTCTTTTA
TAATGGGACTGCTACTAGATCCTTTTCTGATAGTCAAAACTGCAATGAGA
ACTGTCAGTCTCTTTTGTGTCACCAGTTAATTGCCTTTTAAATAGTAAAC
GACTTTCTCCTACTCAGAGCACATTCCAAGAGGTTATAAACCAATTACCC
AAAGGTCATAAAAAGGGAATTAACAATTTGTTATAGGTGCTAGGACAGAA
GATAAAATATTGACTGGGCTTATCTATACAAAACTTCACTAATAACTTAG
CTATGGTTTTCAACTTTCAACCTGTGAAGCTGTGGCAGGGCATGGATGTT
TAACCAGATAATCACTCCTAATGAAATGCACCTAAACATTCTCTGTTGTA
AACTTCTATTTCAAGGAATGATTTGATTTTATATGCGAACCGGTTATGAA
CCTTTTAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_g02.b1 MSMg01no170_g02.b1 CHROMAT_FILE:
MSMg01no170_g02.b1 PHD_FILE: MSMg01no170_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:18 2005
         (315 letters)



>mm_chr10_72268004_72268718
          Length = 715

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgcagtgaacttctactgtaagaaactttaagtcagtctttcagaaggaat 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcatctgcagtgaacttctgctgtaagaaactttaagtcagtctttcagaaggaat 455

                                                                       
Query: 65  gtatcaacagagccacacagagagaacataggacgccaagagactctgaggctacctaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtatcaacagagccacacagagagaacataggacgccaagagactctgaggctacctaac 395

                                                                       
Query: 125 aacagaagatacattttatattcaaattgtttaaaatgtcatacacatgcctattcatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aacagaagatacattttatattcaaattgtttaaaatgtcatacacatgcctattcatgc 335

                                                                       
Query: 185 atttccgggcttgggtgtatgaatagtaagacctctaatatcagtagcaaaagagctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atttccgggcttgggtgtatgaatagtaagacctctaatatcagtagcaaaagagctctc 275

                                                                       
Query: 245 agaaagagaaaaattgaaactccaattttttcaaatgcctttattgaaacacaatgacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agaaagagaaaaattgaaactccaattttttcaaatgcctttattgaaacacaatgacat 215

                     
Query: 305 ctaaaagcaa 314
           ||||||||||
Sbjct: 214 ctaaaagcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)