BAC Information

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BAC

Clone NameMSMg01-170L17
Chromosome10 (Build37)
Map Location 13,865,222 - 13,865,528
singlet/doubletsinglet
Overlap geneHivep2
Upstream gene4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L17.T7 (MSMg01no170_l17.b1)MSMg01-170L17.TJ (MSMg01no170_l17.g1)
ACCAG367205AG367206
length747734
length of high quality
(start - end)
314 (43 - 356)216 (438 - 653)
definitionCHROMAT_FILE: MSMg01no170_l17.b1 PHD_FILE: MSMg01no170_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:46 2005CHROMAT_FILE: MSMg01no170_l17.g1 PHD_FILE: MSMg01no170_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAACTAATTAAGAATAAAATAAAACAGAATAAAATAATTCATTTAT
TTTGGACCTTTGAATCCCTACAAAGTTAATTAAGAAATTTAGTGCCAAAC
AAGAAAATAAGTTTCACCAGTTACTGAGTTTTTCCTAAATTTTTGTGTGG
TTTTATTTCATTTCATTTTGTTCCTAAAATCTCTGGATGCCTCACAGAGC
TCATCCTTCATCCCCAACAAATCCTCTGGCTTGCTACCCAGTCCAGTTAT
CTTTAAAGAAAAAATGCCCCCTTGCTGCTTGTTCTCATAGGAGGCAGCAG
AGTTGGGTTCTTTCACGCACCCCCGTCCTGAGTCCTCATGTTGTGTTGAC
TGGTCGCCTCTGGATGGCAAAGACAACTATATCTTTCTGTGATGTGTGAA
AGAGACATTTCTGGTCAGAGAAAAATAGACCTGACCATGCTCTGACAGGT
GTCCCTCCTGACTGCTCTGTAGGATGAAGACTTTCCTCTCTCTAAAAAAT
GTATAGAAAGGATTATGACCAGCCATTGTCCCTTGTCACAGAAATTCTGT
CCTGCTACCTTGTCATTTTGCACACCTTGATGGAAGCTTTACAGGGCAAT
GACTGGGGTGAAGGGACCGTGACACCCAGGATGACATAAGATATAATTGG
TTTAGTCTGAACTTAGAGCCAGAGAGAAGGTTTAGATGGAGAAACAA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTT
AATAAGGTCATTTGACTTTCTGGAGTCCATCTTCTTGAGTTTTATATATA
TATATATATATATATATATATATTGATATATTATATCCCCCTATCTGATT
TAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGACAGTGTCTTTTGCCTTACAGAGCTTTGCAAATTTATGAGGTTCCAT
TTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA
TTTTCCCCCTGTGTTTATTTCTTTCCCCCCCCCCCCCACTTTCTTCTTTG
TAAGTTTTAGTGTCTCTGGTTTTATGAGAAGAACCTTGATTCACTTAGAC
TTGAGCTTAGTACAAGGATATAAGAATGCATCAATTTGCATTCTTCTACA
TGATAACCACCAGTTATGCCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGAAG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTCT
GTCATTGTACCATTACCATGCAGTTTTTATCACAATTACTCTGCAGTACA
CCTTGAAGTCAGGGTTGGTGATTCCCTCAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l17.b1 MSMg01no170_l17.b1 CHROMAT_FILE:
MSMg01no170_l17.b1 PHD_FILE: MSMg01no170_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:46 2005
         (314 letters)



>mm_chr10_13865019_13865732
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaactaattaagaataaaataaaacagaataaaataattcatttattttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaactaattaagaataaaataaaacagaataaaataattcatttattttgg 263

                                                                       
Query: 64  acctttgaatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctttgaatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttc 323

                                                                       
Query: 124 accagttactgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accagttactgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcct 383

                                                                       
Query: 184 aaaatctctggatgcctcacagagctcatccttcatccccaacaaatcctctggcttgct 243
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 384 aaaatctctggatgcctcacagagctcatccttcatccccaccaaatcctttggcttgct 443

                                                                       
Query: 244 acccagtccagttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acccagtccagttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggc 503

                  
Query: 304 agcagag 310
           |||||||
Sbjct: 504 agcagag 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)