BAC Information

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BAC

Clone NameMSMg01-171D22
Chromosome10 (Build37)
Map Location 49,185,848 - 49,318,620
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652, Ascc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D22.T7 (MSMg01no171_d22.b1)MSMg01-171D22.TJ (MSMg01no171_d22.g1)
ACCAG367551AG367552
length753717
length of high quality
(start - end)		322 (41 - 362)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no171_d22.b1 PHD_FILE: MSMg01no171_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:25 2005CHROMAT_FILE: MSMg01no171_d22.g1 PHD_FILE: MSMg01no171_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,185,848 - 49,186,162)(49,318,421 - 49,318,620)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTCATTTGTTGTCATTTGGTACTTCCTGTGGAGGACCCTATGAGCACTA
GCAGCAACTAATCAGGAGGGGCCACAGCTGCTGTTGTACAATATGCTGTA
TTGTATAGAAAGGCACATTCCCATGTTGCATTTTATAGAAAGGCACATTC
CCACATGGACTACCTAGTCATATATTCCAGAGGGTGAAGAAACTTGTTTC
ATAAGTAAAGGTCTGAAAACAGAGATTCTCTATTACACTGGATAAGTTTC
TAGCACATATAAATAGATGGACAGTGTCAGTGTCAGAGAACAAAGAAGCC
AGATGTTCATTATTTTTGCACCCTNACTNCCCCAAGAATACTAAAGCAAC
TCTCAGGGACAAGTTCAACGTTGAAAAATCCCCTATAGTTTCTAAGCACA
TATTTTGCTCAAAGTAAAAAAAAAAAAAGGCAATGTGTTATCATTAGTGT
CTTGAGTTTTAAAATACCTTATAGAGAAGTACATTTATTTGCATAAACAT
AAAGTATTGTTGAATATTTAACCTATAGTGCTGTGATAATTTCCCAGATC
TTGTTCAAAATTTAACTCTACATTTCATAGAAGAGTCATGTAATCTCACT
AGGAAAAAGAAGAGAAAGACCAGTTATGCACCTATAGTTTTGTAGAATAC
ATATTTGCAGATAATTGTCTCCCCCATTCTCATAGAACTTATTTACTTAT
TAC

TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATGTCACTCCATCTCAATT
ATGTCTATGTAGCAAAATGTTTATATATGTGTACATGTTTACATAATCTA
CCTAGTATCTTTGTAGATATGCTAAATACAACAGAGTTGTTTGATGCCTC
CAATTAGAAGAATTGGAGTTTGAGTTTTCTTTATTTCTCTACTGTGTGAT
TTTGAACAAGGCACTTTTGCTTGCCATAATTATTTTTATTATTATTATTA
TTTTTATTATATTTATTATTTTTATTTTGTGACTACAAAATGTCACAGAG
AATCTATACTGTTTTATTTTTATCCATTCTNTCCTAAATTATCCACTCTT
TTATTTTCATCATGGTTCACCAAATGAAAACAATGTTCTATGCTTTTTGC
GGGGTGTGGAAATTGGACAGATGAAAAGACCAGCAAAGATCTCTCCTTCA
TTTGATCCTTGAAGTTCCTCTGCTCACATCTAGGTAAATCCAGGCAAAGA
ACACCTAATTGACTAGCTGAGTGCTCAGTTAGTTACCGTCAAAAATGCTA
TTAGTACCTTGGTCCCGGGTTAAAGAGATCTCTTCATATTTATAAATATG
CCCTTGCTCTTATTACATGACCCAGTTTTTGCCCCTAGTTTTAAGTTAGC
CGCTTTACACCATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d22.b1 MSMg01no171_d22.b1 CHROMAT_FILE:
MSMg01no171_d22.b1 PHD_FILE: MSMg01no171_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:25 2005
         (322 letters)



>mm_chr10_49185644_49186365
          Length = 722

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcatttgttgtcatttggtacttcctgtggaggaccctatgagcactagcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcatttgttgtcatttggtacttcctgtggaggaccctatgagcactagcag 264

                                                                       
Query: 65  caactaatcaggaggggccacagctgctgttgtacaatatgctgtattgtatagaaaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactaatcaggaggggccacagctgctgttgtacaatatgctgtattgtatagaaaggc 324

                                                                       
Query: 125 acattcccatgttgcattttatagaaaggcacattcccacatggactacctagtcatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattcccatgttgcattttatagaaaggcacattcccacatggactacctagtcatata 384

                                                                       
Query: 185 ttccagagggtgaagaaacttgtttcataagtaaaggtctgaaaacagagattctctatt 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ttccagagggtgaagaaacttgtttcataattaaaggtctgaaaacagagattctctatt 444

                                                                       
Query: 245 acactggataagtttctagcacatataaatagatggacagtgtcagtgtcagagaacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acactggataagtttctagcacatataaatagatggacagtgtcagtgtcagagaacaaa 504

                          
Query: 305 gaagccagatgttca 319
           |||||||||||||||
Sbjct: 505 gaagccagatgttca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_d22.g1 MSMg01no171_d22.g1 CHROMAT_FILE:
MSMg01no171_d22.g1 PHD_FILE: MSMg01no171_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:25 2005
         (288 letters)



>mm_chr10_49318221_49318908
          Length = 688

 Score =  340 bits (176), Expect = 4e-98
 Identities = 194/200 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatgtcactccatctcaattatgtctatgtagcaaaatgtttatatatgtgtacatg 60
           ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 400 ctaaatgccactccatctcaattctgtctatgtagcaagatgtttatatatgtgtacatg 341

                                                                       
Query: 61  tttacataatctacctagtatctttgtagatatgctaaatacaacagagttgtttgatgc 120
           |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 340 tttatataatctacctagtatctttgtagatatgctaaatacagcagggttgtttgatgc 281

                                                                       
Query: 121 ctccaattagaagaattggagtttgagttttctttatttctctactgtgtgattttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctccaattagaagaattggagtttgagttttctttatttctctactgtgtgattttgaac 221

                               
Query: 181 aaggcacttttgcttgccat 200
           ||||||||||||||||||||
Sbjct: 220 aaggcacttttgcttgccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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