BAC Information

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BAC

Clone NameMSMg01-171G12
Chromosome10 (Build37)
Map Location 100,328,987 - 100,329,291
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171G12.T7 (MSMg01no171_g12.b1)MSMg01-171G12.TJ (MSMg01no171_g12.g1)
ACCAG367659AG367660
length730784
length of high quality
(start - end)
314 (45 - 358)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no171_g12.b1 PHD_FILE: MSMg01no171_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:37 2005CHROMAT_FILE: MSMg01no171_g12.g1 PHD_FILE: MSMg01no171_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTATCTGGAGTATGGGTATAATTTATGAAACTCACATTTTTGG
ATCCCTAATCGTCACTCCAAAGAATCAAGGGACAATCATTCCAAGAGTGT
CAACTGAGGCTCTGCAGTGGTGAAGTGCCCAAGTGTTTGTCAGGGTAGTG
TGTTTGGGCAATGACTTGAAACCACACAAATAGTCTCCACCAAATTTTGA
CTTTCTAGTTTATAAGTAAATATTTCTTACCAGACCAGGAAAACTTTAAA
GAATGTCTCTGAATGATTTTTATCACAAGGGCAAAATACACAGCATCTGA
TGGTTTCNTTACCTCCTAAAACAGAAACCCCTGGGTGAAAGTCTATAAGC
CTTTGTCATTAACTACACAGAAAAAAAACAATACGAGGGAAGATATGGGT
TTATAGCCTATGTTCTGTGAGTGTATGTAAAGGTAATATCCTAACTCTAA
GATAGCAGAGGAGAATCTTAAAAGCCTAGATGCAGATCATAATTGAGTTT
CTTCCATTTGAGGCTCAGATTTGCTGGCTTTAATCTAATTTAAAATCCTG
AGCAGCAGTCCATTGTTTGTTACATCTTCTTATTTATTAGGCATCAATCA
GCTCTTTTTTATTATCTACCCCTTTTTGCCCCTTTTGCTTTAAGCTTTCT
ATTCCCTATATAACCCGCTTTTTTGTTTTT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGCTTCTTGTATGTTCTCAGG
GAACTCTTTATTTAGGTTAGGGAAGTTTTCTTCTATCTTTTTTTTTTTTT
TAAGATATTTACTGGTCCTTTAAGTTGAAAATCTTCATTCTTATCTATAC
CTATTATCCTTAGATTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATG
TTTTGAGTTAGGATGTTTATGCCTTTTGCATTCTCATTGATTGTTGTGTC
CATGCTTTCTATGGAATCTTCTTTTTTTAAGAGCCTCTCTTCTATCTCTT
ATATTCTGTTTGAGTGGTTTCCATATACGNTNNCTGATTTTTTTTTTAGG
ATTTCTATCTCCAGACCCCCCTTAAAAAAAAAAAAAAAATAATGGTGGGG
GGGGGGGGTTTTTAGATCCTGGAATGTTTTTTATAATTTCCTTATTTTGT
TCTTCCCCACAAATCTTTAAAAAAAAATATTTTGTATTTTTTTTTTTAAG
TATATTATATTTTATCTTTCCCCCCCGCCTTTTTTTTTTTTTTTCCTGAT
GTATATCAAGTCTTAGAATTCAATTTCCTCTTTCATGAATTTTCTTTTCT
TTTACCCCCCACAGCCCAAACCCCTTTTTTATTTTTTTTTTTCGTTTATA
TATATTAGTCGTTAAAATATGTCCAGATCATTTTCACTTCTCTCTCTTCT
TGCCTCTTGTTTGTTCTGCATTTTACTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_g12.b1 MSMg01no171_g12.b1 CHROMAT_FILE:
MSMg01no171_g12.b1 PHD_FILE: MSMg01no171_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:37 2005
         (314 letters)



>mm_chr10_100328783_100329496
          Length = 714

 Score =  545 bits (282), Expect = e-159
 Identities = 299/310 (96%), Gaps = 10/310 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctttatctggagtatgggtataatttatgaaactcacatttttggatccctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattctctttatctggagtatgggtataatttatgaaactcacatttttggatccctaa 450

                                                                       
Query: 65  tcgtcactccaaagaatcaagggacaatcattccaagagtgtcaactgaggctctgcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcgtcactccaaagaatcaagggacaatcattccaagagtgtcaactgaggctctgcagt 390

                                                                       
Query: 125 ggtgaagtgcccaagtgtttgtcagggtagtgtgtttgggcaatgacttgaaaccacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggtgaagtgcccaagtgtttgtcagggtagtgtgtttgggcaatgacttgaaaccacaca 330

                                                                       
Query: 185 aatagtctccaccaaattttgactttctagtttataagtaaatatttcttaccagaccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatagtctccaccaaattttgactttctagtttataagtaaatatttcttaccagaccag 270

                                                                       
Query: 245 gaaaactttaaagaatgtctctgaatga-----tttttatcacaagggcaaaatacacag 299
           ||||||||||||||||||||||||||||          | ||||||||||||||||||||
Sbjct: 269 gaaaactttaaagaatgtctctgaatgagaggg-----accacaagggcaaaatacacag 215

                     
Query: 300 catctgatgg 309
           ||||||||||
Sbjct: 214 catctgatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)