BAC Information

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BAC

Clone NameMSMg01-171O02
Chromosome10 (Build37)
Map Location 34,647,637 - 34,783,914
singlet/doubletdoublet
Overlap genenone
Upstream gene2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171O02.T7 (MSMg01no171_o02.b1)MSMg01-171O02.TJ (MSMg01no171_o02.g1)
ACCAG367976AG367977
length732726
length of high quality
(start - end)
329 (45 - 373)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no171_o02.b1 PHD_FILE: MSMg01no171_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:12 2005CHROMAT_FILE: MSMg01no171_o02.g1 PHD_FILE: MSMg01no171_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,647,637 - 34,647,959)(34,783,627 - 34,783,914)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACAGAGGAATCTCAATTGGCTGAAAAGCACTTAAAGAAATGTT
CAACTTCTTTAGTCTTCAGGGAAATGCAATTCAAAATGACACTGAGATTC
TACCTTATACCAATCAGAATGGTTAAGATAAAAAACTCAAGCAACGGCAC
ATGCTGGTAAGGATGAGAAGAAAGTAGAATAATCCGCCATGCTGGTGGAA
TTGCAAACTTGTTTTAAGCTATCCACATTGTCTGACTCTCTAATTCTCAC
AGGCCTTAAATAAATCATGGGGCAATGTTAGAGAATTGCAGGAACTCTGT
ACACCAACAGGTATTTTTTCTCCTACCGACTTTGTAGGAGCAAGAATTCC
TAAAATTCTAGAATGTTCACCTAATAAACATTTTGATGAGCATCTCTCTC
ATGGAAAAAAATTGCACTTGAATAGCCAGGTATAAATAGAACTTAGAAAC
AGAGAATTTATCACAATTGTTCTGTTGTACAGCTTGAGGTCAGGCATGGT
GATTCCACCAGAGGTTCTTTCAGTATTGAGAATAGTTTTGCTATCCTAGG
TTTTTTGTTATTCCAGTCGAATTGGGAAATTTGCCATTTTTAACTCAGTG
AAGAATTGAGTTGTAATTTTGATGGGGATTGCATTGAATCTGTAGATTGC
TTTAGGAAAGATAGCCATTTTTACTATATTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGCAGTAAATCTAAATCCAACCCTC
ATTGCAGCAAAGATGACCAGAGCCGCAGGTCATCTTAGCCATCTTCTCCT
ATCTCCCAGAGAATAGATGATTGGCCCATAAACCGTATTCTTGATGCTCA
TACAATCCTGTTTTAAATAACCAGATTATTGGACTAGTAGTCTTGACTTT
GTGAAGTATTTCATATTCTTCAGTCCAGACTCTGAAAGTCTAAGGGGCAG
CACTAAGAGACAATTCAGACTTTAGGAATTGAGGCCATGATGAATTGCAT
TTGCCGGGTTGTTATTTCTTATCCCCCCCGCCACGAAGCTTGTCATGGAA
CCAAATAGTCATGGAACCAAATGAATAGAAAAGACATACCTGACCATAGA
GGGTGTCAAGCGGATCCACGGACCTTGCTCTAAGACTTAATAGAGTATCA
ATGCTGCAGTCATGCAGGATAGTGTCTAAGTAGATCTATCTCTTTGAACT
GAAAAAAATAGACTATGTATCTATACATGGGTATGTTCACTTCTGGCTGT
TAATTTTAGGAAAAAAGAATAAGTGGGACATGAGAATACACACATGAAAA
ATCCTAACAAACATGCAATATAGCATGAAAATGACACCAGTTGCTTGCAC
AACGAAATTTATTCCATAAAATTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_o02.b1 MSMg01no171_o02.b1 CHROMAT_FILE:
MSMg01no171_o02.b1 PHD_FILE: MSMg01no171_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:12 2005
         (329 letters)



>mm_chr10_34647433_34648161
          Length = 729

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaacagaggaatctcaattggctgaaaagcacttaaagaaatgttcaacttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaacagaggaatctcaattggctgaaaagcacttaaagaaatgttcaacttct 264

                                                                       
Query: 65  ttagtcttcagggaaatgcaattcaaaatgacactgagattctaccttataccaatcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtcttcagggaaatgcaattcaaaatgacactgagattctaccttataccaatcaga 324

                                                                       
Query: 125 atggttaagataaaaaactcaagcaacggcacatgctggtaaggatgagaagaaagtaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggttaagataaaaaactcaagcaacggcacatgctggtaaggatgagaagaaagtaga 384

                                                                       
Query: 185 ataatccgccatgctggtggaattgcaaacttgttttaagctatccacattgtctgactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatccgccatgctggtggaattgcaaacttgttttaagctatccacattgtctgactc 444

                                                                       
Query: 245 tctaattctcacaggccttaaataaatcatggggcaatgttagagaattgcaggaactct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaattctcacaggccttaaataaatcatggggcaatgttagagaattgcaggaactct 504

                                  
Query: 305 gtacaccaacaggtattttttct 327
           ||||||||||||||| |||||||
Sbjct: 505 gtacaccaacaggtactttttct 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no171_o02.g1 MSMg01no171_o02.g1 CHROMAT_FILE:
MSMg01no171_o02.g1 PHD_FILE: MSMg01no171_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:12 2005
         (288 letters)



>mm_chr10_34783427_34784114
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggcagtaaatctaaatccaaccctcattgcagcaaagatgaccagagccgcaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 488 cttggcagtaaatctaaatccaaccctcattgcagcaaagatgaccagagtagcaggtca 429

                                                                       
Query: 61  tcttagccatcttctcctatctcccagagaatagatgattggcccataaaccgtattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcttagccatcttctcctatctcccagagaatagatgattggcccataaaccgtattctt 369

                                                                       
Query: 121 gatgctcatacaatcctgttttaaataaccagattattggactagtagtcttgactttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatgctcatacaatcctgttttaaataaccagattattggactagtagtcttgactttgt 309

                                                                       
Query: 181 gaagtatttcatattcttcagtccagactctgaaagtctaaggggcagcactaagagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaagtatttcatattcttcagtccagactctgaaagtctaaggggcagcactaagagaca 249

                                                           
Query: 241 attcagactttaggaattgaggccatgatgaattgcatttgccgggtt 288
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 248 attcagactttaggaattgaggccatgatgaattgcatttgctgggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)