BAC Information

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BAC

Clone NameMSMg01-173H08
Chromosome10 (Build37)
Map Location 99,920,822 - 100,077,883
singlet/doubletdoublet
Overlap geneTmtc3, 4930430F08Rik, 1700017N19Rik
Upstream geneLOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H08.T7 (MSMg01no173_h08.b1)MSMg01-173H08.TJ (MSMg01no173_h08.g1)
ACCAG369060AG369061
length697785
length of high quality
(start - end)
329 (9 - 337)283 (131 - 413)
definitionCHROMAT_FILE: MSMg01no173_h08.b1 PHD_FILE: MSMg01no173_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:08 2005CHROMAT_FILE: MSMg01no173_h08.g1 PHD_FILE: MSMg01no173_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,077,571 - 100,077,883)(99,920,822 - 99,921,104)
sequence
CTTCCTATAGGGAGAGGATCCGCGGAATTCTTCTTCGCCAGGCTGAACCA
TTATACGATGTTGACATATGTTTATCTGAGAAAAATAAGAAAGGAAATAT
GGCTGGATTAAACAATTATATTCCAAGAGCATTTCAAAGCTATAAACATC
TCAGCAGTAGGAATTATCCTTCATGTGTTTCCTCTACCATTTGAAAACAA
GTGACTTTAATACGTCCACTTTAGTGATCAGCAACATGGTTGCAAAGCTC
TCAATTTACAGTTCATTTTCTTTTGTTTTCTTTTTATTAGATATTTTCTT
TATTTAAATTTCAAATGTTATCCACTTTCCTGGTTTTTTTTTGACCCCCC
CCTCGCCCCCTCCTTCCCCCATTCCATTCCCCTACACTGGGGCATCAAGC
CTTACAAAGGACCAAGGGCCTCTCCTCCCATTGATAACCGACTAGGCCAG
CCTTTCCTACATATGCAGCTGGAGCCATGAGTCCCATCATGTGTACTCTT
TGGTTGGTAGTTTAGTCCCTGGGAGTTCTGGGGTTACTGGTCAATTCATA
TTGTCGTTCCTCCTAAGGGGTTGCTAACCCTTTCAGATCTTTGGGGCCTT
TCTCTAGCTCCTTCATTGGGGACCCTATCCTCTGTCTAATGATAGGTTGT
GAGCATCCACCTCTGTATTCGTCATGCACTGGTGGATTCTCTCTGGG
CCTCTTCTCTCCTCTTTTTTTTTTATTTTATCTTCTNNAGAACTNNNTTT
TTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATATACATACTCACACAT
AATTTTAAAAAAGAAATATTCAAAAGGACCTATGAGTTTAGAGACTTGTA
AAGAATAAGATAGGAAGCGTTTATGGAAATAGTCTATTGATGACTTTAAA
AACATGTGTGTATTTTTAAAATTTAAAATAAAATTCTGCTTACCAGCTCC
ATTCCCAATAGTGCTGAACCAGTGATATTCCTTTACACAGAAGAGTGACA
CTTTTGTGCACCTCATCTCACTGAATTATTGATGCACTAATTATAGAACT
CATTATTTTATATATCACTANATTCCAAGACAATACCTAACTGTATGATG
TTACATTCTGTGTGACTTATCTTGATATAAAAACAATGAAAGGCAAAGAA
GCGAAGAAGTATGTGTACCCTAAGAACTAAGAAAATATGGTTTTATATTT
AAATATTTCACCATATGAACTTCAAGTAAATTTAGTTTAGTATTCATAGA
AATTACACACACACACACGCATACATATGAGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAATATATCTATATCCATCCATTTTATCTTCTTTCTTTAC
ACAATCTTCTTATATTCTTTTCACCACCTCTTTTATCTAACTCTCCCCAC
CTCTTTATTAATTATATCTTTTCCCACTCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h08.b1 MSMg01no173_h08.b1 CHROMAT_FILE:
MSMg01no173_h08.b1 PHD_FILE: MSMg01no173_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:08 2005
         (329 letters)



>mm_chr10_100077417_100078145
          Length = 729

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcttcttcgccaggctgaaccattatacgatgttgacatatgtttatctgagaaa 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggaattcttcttcgccaggctgaaccattatacgatgttgacatatgtttatctgagaaa 408

                                                                       
Query: 76  aataagaaaggaaatatggctggattaaacaattatattccaagagcatttcaaagctat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aataagaaaggaaatatggctggattaaacaattatattccaagagcatttcaaagctat 348

                                                                       
Query: 136 aaacatctcagcagtaggaattatccttcatgtgtttcctctaccatttgaaaacaagtg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaacatctcagcagtaggaattatccttcatgtgtttcctctaccatttgaaaacaagtg 288

                                                                       
Query: 196 actttaatacgtccactttagtgatcagcaacatggttgcaaagctctcaatttacagtt 255
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 actttaatacgtccacttaagtgatcagcaacatggttgcaaagctctcaatttacagtt 228

                                                                       
Query: 256 cattttcttttgttttctttttattagatattttctttatttaaatttcaaatgttatcc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cattttcttttgttttctttttattagatattttctttatttaaatttcaaatgttatcc 168

                        
Query: 316 actttcctggttt 328
           |||||||||||||
Sbjct: 167 actttcctggttt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_h08.g1 MSMg01no173_h08.g1 CHROMAT_FILE:
MSMg01no173_h08.g1 PHD_FILE: MSMg01no173_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:08 2005
         (283 letters)



>mm_chr10_99920622_99921304
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatatacatactcacacataattttaaaaaagaaatattcaaaaggacctatgagttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 acatatacatactcacacataattttaaaaaagaaatattcaaaaggaaatatgagttta 260

                                                                       
Query: 61  gagacttgtaaagaataagataggaagcgtttatggaaatagtctattgatgactttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacttgtaaagaataagataggaagcgtttatggaaatagtctattgatgactttaaa 320

                                                                       
Query: 121 aacatgtgtgtatttttaaaatttaaaataaaattctgcttaccagctccattcccaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgtgtgtatttttaaaatttaaaataaaattctgcttaccagctccattcccaata 380

                                                                       
Query: 181 gtgctgaaccagtgatattcctttacacagaagagtgacacttttgtgcacctcatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctgaaccagtgatattcctttacacagaagagtgacacttttgtgcacctcatctca 440

                                                      
Query: 241 ctgaattattgatgcactaattatagaactcattattttatat 283
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaattaatgatgcactaattatagaactcattattttatat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)