Query= MSMg01no173_k11.b1 MSMg01no173_k11.b1 CHROMAT_FILE:
MSMg01no173_k11.b1 PHD_FILE: MSMg01no173_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:22 2005
(671 letters)
>mm_chr10_119376178_119377248
Length = 1071
Score = 1164 bits (602), Expect = 0.0
Identities = 653/670 (97%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattgtgtttcccggatcagcagttatgacattttttttttctggttatgaagt 63
|||||||||||||| | | || |||||||||||||||||||||||| |||||||| ||||
Sbjct: 204 ggaattcattgtgtgtgctggctcagcagttatgacattttttttt-ctggttataaagt 262
Query: 64 ttctctggccaaaacctatgtttcagactcat-gatgggttccaagatctggttacaaac 122
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 ttctctggccaaaacctatgtttcagactcaacgatgggttccaagatctggttacaaac 322
Query: 123 cacaaccattcttaaattacttttaaaaataattagataaatatagtaaaaactctctct 182
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 cacaaccgttcttaaatttcttttaaaaataattagataaatatagtaaaaactctc-ct 381
Query: 183 -ataagaaatttaggctgaaatgtggtgattctctttggcagtttaaccataagggaagt 241
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tataagaaatttagggtgaaatgtggtgattctctttggcagtttaaccataagggaagt 441
Query: 242 gcttttgaaacatatgcagaaattctaattgttgaaaaaacagcattggagactacttct 301
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 gcttttgaaacacatgcagaaattcgaattgttgaaaaaacagcattggagactacttct 501
Query: 302 gccatacatattcatgactaattaccacacggttaatcaataccaatcaaacttctaatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gccatacatattcatgactaattaccacacggttaatcaataccaatcaaacttctaatg 561
Query: 362 taagacttaagccaattacaatttctcattgcaaaataaagcgactagatgcaactgaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taagacttaagccaattacaatttctcattgcaaaataaagcgactagatgcaactgaat 621
Query: 422 tccacatctatctccaggcacgtgatggtgtaatcttaccaaaatatccccttaacaatt 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tccacatctttctccaggcacgtgatggtgtaatcttaccaaaatatccccttaacaatt 681
Query: 482 ttcaggaatttcaaaagtttctaaggctgaaatactagttgatacatgggagacacctca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttcaggaatttcaaaagtttctaaggctgaaatactagttgatacatgggagacacctca 741
Query: 542 tgcaggaacggaggagtgaataactcacttaatgttcttctattgaatttgcatgattat 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 742 tgcaggaacggaggagtgaataactcacttaatgttcttctattgaatttgcgtgattat 801
Query: 602 aggtgctattctaatgtctccagagtaaagactcagttttagccagtgactgccacattt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aggtgctattctaatgtctccagagtaaagactcagttttagccagtgactgccacattt 861
Query: 662 gtatagactt 671
||||||||||
Sbjct: 862 gtatagactt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_k11.g1 MSMg01no173_k11.g1 CHROMAT_FILE:
MSMg01no173_k11.g1 PHD_FILE: MSMg01no173_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:22 2005
(465 letters)
>mm_chr10_119450651_119451515
Length = 865
Score = 735 bits (380), Expect = 0.0
Identities = 416/428 (97%), Gaps = 2/428 (0%)
Strand = Plus / Minus
Query: 38 tgcataatatgccaccttttgcttttctgatcgagactctgggaaggttcctcaaatgag 97
||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 865 tgcataaaatgctaccttttgcttttctgattgagactctgggaaggttcctcaaatgag 806
Query: 98 atgaagggtggaacaacatggggacaggaaggccagtgctcaggctgacagaatgtgttg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgaagggtggaacaacatggggacaggaaggccagtgctcaggctgacagaatgtgttg 746
Query: 158 ggatctgtttggccttttattagttttgggtctttgggtagttacacagcccaaccacag 217
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 745 gggtctgtttggccttttattagttttgggtctttgggtagttacgctgcccaaccacag 686
Query: 218 cttttccttctgtaaaatgggtcatcgctgggctgcccaggattaagaaaggacacacat 277
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttttccttctgaaaaatgggtcatcgctgggctgcccaggattaagaaaggacacacat 626
Query: 278 gttatcagaaggtgccgtgtctcactttggagggacaaatccctgttgcaaaggtcaaca 337
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 gtcatcagaaggtgccgtgtctcactttggagggacaaatccctgttgtaaaggtcaaca 566
Query: 338 gacaggtcagcgtccaaaaggctttagggacaagggcacacacagggcagagacaa-tga 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 gacaggtcagcgtccaaaaggctttagggacaagggcacacacagggcagagacaaccg- 507
Query: 397 aagttctctgacttgacaggcaagtgtctttgttggaaggcaggagctatgattctggac 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagttctctgacttgacaggcaagtgtctttgttggaaggcaggagctatgattctggac 447
Query: 457 ttgttggg 464
||||||||
Sbjct: 446 ttgttggg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
