BAC Information

Click to search

BAC

Clone NameMSMg01-173L22
Chromosome10 (Build37)
Map Location 34,562,166 - 34,562,485
singlet/doubletsinglet
Overlap genenone
Upstream geneSult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L22.T7 (MSMg01no173_l22.b1)MSMg01-173L22.TJ (MSMg01no173_l22.g1)
ACCAG369260AG369261
length748748
length of high quality
(start - end)
321 (45 - 365)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no173_l22.b1 PHD_FILE: MSMg01no173_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:28 2005CHROMAT_FILE: MSMg01no173_l22.g1 PHD_FILE: MSMg01no173_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCCACAAATCTGGAGGATGGAAATGTTATTTCACTGGGAGCAAA
CTGAGTTCTGTTTATAACAGTTGTGCATATTTTTTATTATATTCCCACAA
ATGCAGCTACATGAACCCAAGAACTACCTACATTTTGAATCTGACTTATA
GCTGCCACCACCACCACCACCACTAACAGCTACTAAAGAATTCACATGAT
CAGATTTGACCATACCCTGACAGTGCTTCTGCCTTCAATACCACTGGGCA
TGAATCTGCCTAGTATCTTCTGTTCTGTCAGACAGCATAGAAACAGGTTA
ATAGCAAGAAATTTGATAANCACCCNAGACCTNTCCTGCCAGCCTTATTT
GATTTTTTCCAATGTGAAAGATTGGATCTAAAATATAAATATGTACAGTG
CAGGTGGTCTAGCATCCCACATCCAGAAATGCATCTCAATCAAATCTTCT
GAAAAGGCGTTTTGGCACACATGCATTGTACACAGTAATGGGTCTTATAA
AAACAATTTCTTTCAATTATATCATGTACTTCTACTGTATTCACACTGTC
AATCATCCTTTCGCTTCTCACTGCCTGTTCATTGCCTTCCATCCCCAGCC
ACCTCTCTGCTTTCATGTTCTGTGAACAAATGATTTTATGTACCTGTATA
CAATCTAGGATCCATTTTAAATTAAGGTCTGTTTAAACAACTCTTGCN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGTTTGGTTGTCTTTTCCTG
TCTTCCTTTAAGGACTTGTAACTCTTTAGCAGTATTCTCCTGTATTTCTT
TAAGCGAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGA
TATGCTTTTTAAATCCGGGTCTAGCTTTTCGGTTGTTTTGGGGTACCCAG
GACTAGGTTGTGTGGAAGTGCTGCATTCTGATGATGGTGAGTGGTCTTGA
TTTCTGTTAGGATTCTTATGTTTGCCTTTTGCCATCTGGTATTTTCTGGA
GCTAGTTGTTATATTTGTTTCNGCTCCGNAGCTTGCCCTCAGGTGATTAT
GTTAGCCTCTATCAGCAGACCTGGGAGACTAAAAATATACTTAGTTTCAG
TGGGCAGAGTACTCTCTGCAGGCAAGCTCTCCTCTTGCAGGGAAGGTGCC
TAGATATCTGGTGTTCGAACCTGCCTCTTGGCAGAAGTTGTGTTCCACTC
ACCAGAGGTTTTAAGATCCTGTGGAGGGTCCTGTGTATACCTTGTGGTTG
TCCGCAGACTCCAAGTTCAAGGTACCCCTGTGCTGTCGTGGACCGGAAGG
GACTTGTGCCCCGGATCAGGCCGGTTTATCTGCTTCCCTACTTAATGCAG
TCTCAGGCCCCCTTGAGATTGGATTGTAGCAGGCACTGTATTCCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l22.b1 MSMg01no173_l22.b1 CHROMAT_FILE:
MSMg01no173_l22.b1 PHD_FILE: MSMg01no173_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:28 2005
         (321 letters)



>mm_chr10_34561962_34562689
          Length = 728

 Score =  534 bits (276), Expect = e-156
 Identities = 306/320 (95%), Gaps = 7/320 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccacaaatctggaggatggaaatgttatttcactgggagcaaactgagttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattctgtccacaaatctggaggatggaaatgttatttcactgggagcaaactgagttc 465

                                                                       
Query: 65  tg-------tttataacagttgtgcatattttttattatattcccacaaatgcagctaca 117
           ||       |||||| |||||||| |||||||||||||||||||  ||||||||||||||
Sbjct: 464 tgttctgtctttatagcagttgtgtatattttttattatattcctgcaaatgcagctaca 405

                                                                       
Query: 118 tgaacccaagaactacctacattttgaatctgacttatagctgccaccaccaccaccacc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 404 tgaacccaagaactacctacattttgaatctgacttatagctgccaccaccaccatcacc 345

                                                                       
Query: 178 actaacagctactaaagaattcacatgatcagatttgaccataccctgacagtgcttctg 237
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 344 actaacagctactaaagaattcacatgatcagattcgaccataccctgacagtgcttctg 285

                                                                       
Query: 238 ccttcaataccactgggcatgaatctgcctagtatcttctgttctgtcagacagcataga 297
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 284 ccttcaataccactgggcatgaatctgcctagtaccttctgttctgtcagacagcataga 225

                               
Query: 298 aacaggttaatagcaagaaa 317
           ||||||||||||||||||||
Sbjct: 224 aacaggttaatagcaagaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 728
Length adjustment: 9
Effective length of query: 312
Effective length of database: 719
Effective search space:   224328
Effective search space used:   224328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)