BAC Information

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BAC

Clone NameMSMg01-174H02
Chromosome10 (Build37)
Map Location 69,430,925 - 69,431,238
singlet/doubletsinglet
Overlap geneAnk3
Upstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, LOC100039734, 5730416O20Rik
Downstream geneCcdc6, 2310015B20Rik, Slc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H02.T7 (MSMg01no174_h02.b1)MSMg01-174H02.TJ (MSMg01no174_h02.g1)
ACCAG369738AG369739
length719733
length of high quality
(start - end)
318 (44 - 361)---
definitionCHROMAT_FILE: MSMg01no174_h02.b1 PHD_FILE: MSMg01no174_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:18 2005CHROMAT_FILE: MSMg01no174_h02.g1 PHD_FILE: MSMg01no174_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAGTGTTGTGCATGGCTGGTACTCGCTCCTCCCACCTTCCCAGGC
TCACTCCTGGGACCCACCCATCCTTTACCTTTCGCTGCAATGTCTTAGCA
TTTAGCAGCCTTCCCTTTAGTGGCTGCCCTTAGCAATCCTTTTCTAGCCC
ACTATATCACTAATCTTGTGTTTTGTTTCGTTTTGTTTTGTTTTTGTATT
TCTCTTTACTTGTTGATCCCTTTTGATTCTCAAGGGAAATATGGCACACA
TTTGAAACACACAAACACGATATGACCTGGTTACGAGGGAACTTGGAAAG
ATCTTGTTTCTACTCTCCCTCCCCGCGGCCTGGAAATCAGAGGCCTTAAG
GCTGTGTATGTGATCCTATTGAGAGATGGTGCCTAGGGGCCCTGAATATT
TCCACTTGTCTGCAGCAGTGCATGACAGTTCATGCCATGACTGAAGCAGG
TGTTTCTCTAAGCTGAGGCTTATCTGCAAACCATCTGTTAATATGCATGT
TGATGGTTAATTGTCATGCAGATTTTAATGGGGGCCAGAAGATCTGCTAA
AAGCTTTAAAGTAAGGGGAGTACAAGACAGGGCTCCAAAGGCTCTACCAC
ACCCTTAAAATGTCAGAAGCTGCAGGACCCTGAGCTTCTGGAACCTTCGT
TGAACATGGATTACAAACC
ATGATGTGGGAGGCCTGGCGGACGCCTGATTCCGACNNNGAAGNGAANNA
NNNAAATAACGGGANGGGGGAGGNNNGNNNGGNNNANAGAANAAGNNGGA
GGAAAGNNATTTATCGCCAAAAAAAAGGGGGNNNAAAAANAAAAAGGGGA
GAAANGGGANNAAAANAGGGAAAGAGAAAGNGGNGAAGAGANAGAGAAAA
GAANAGGAGGAANAAAGGAAGAGNAAGACANAAGGGGAAAGGNAGTTTTT
TTTTGAATANTTTGTGAATTATTTGTAGAAGTATGTGTTAGGAAGAAAGA
GGGNAGAATTTTATTAATAGTTTCAAAAGGAGAGGAGGAGGGAAAGAAGA
GAGTTTTTTTTCCCCCCCCCCCCCCCTGTTAAGCTTCTGACATCTCAGGA
TATATGCATATATCCCAAAAGAAAAAAAAAAGTCTCTGAGGAGGTCTCTG
TGTGCCTAGCTTTTTTTGTTATTTAAACTAGTTACAGAAGATGATAGATC
GTGGCGACGTTTCAGTTACAAGCCTAGAGCTCAGTCCAGTCATAGGCTTC
ACCATTTAAAAGTCAGCTGTCTGGCATTTGCTTTTTTTACATATTGTCAT
TTTTAAAATGTATTAACAAATCTGTCCCCCATAGACCTGATTTCACTTAT
TTTTTTTTTTTTTTTTATGCGCTTTGAGATTGTGATAATTTGGTTTTTTT
TACTGTGCAATCAATATATACGCGCGTATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h02.b1 MSMg01no174_h02.b1 CHROMAT_FILE:
MSMg01no174_h02.b1 PHD_FILE: MSMg01no174_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:18 2005
         (318 letters)



>mm_chr10_69430721_69431438
          Length = 718

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagtgttgtgcatggctggtactcgctcctcccaccttcccaggctcactcc 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattccacagtgttgtgcatggctggtactcgctcctcccacctccccaggctcactcc 264

                                                                       
Query: 65  tgggacccacccatcctttacctttcgctgcaatgtcttagcatttagcagccttccctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggacccacccatcctttacctttcgctgcaatgtcttagcatttagcagccttccctt 324

                                                                       
Query: 125 tagtggctgcccttagcaatccttttctagcccactatatcactaatcttgtgttttgtt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 tagtggctgcccttagcaatccttttctagcccactatatcactaatcttgtgttttggt 384

                                                                       
Query: 185 tcgttttgttttgtttttgtatttctctttacttgttgatcccttttgattctcaaggga 244
           | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtttagttttgtttttttatttctctttacttgttgatcccttttgattctcaaggga 444

                                                                       
Query: 245 aatatggcacacatttgaaacacacaaacacgatatgacctggttacgagggaacttgga 304
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatatggcacgcattttaaacacacaaacacgatatgacctggttacgagggaacttgga 504

                         
Query: 305 aagatcttgtttct 318
           ||||||||||||||
Sbjct: 505 aagatcttgtttct 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)