BAC Information

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BAC

Clone NameMSMg01-175H10
Chromosome10 (Build37)
Map Location 36,696,649 - 36,696,953
singlet/doubletsinglet
Overlap geneHdac2
Upstream geneLOC667860, Hs3st5
Downstream geneMarcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H10.T7 (MSMg01no175_h10.b1)MSMg01-175H10.TJ (MSMg01no175_h10.g1)
ACCAG370446AG370447
length665755
length of high quality
(start - end)
312 (5 - 316)180 (84 - 263)
definitionCHROMAT_FILE: MSMg01no175_h10.b1 PHD_FILE: MSMg01no175_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:32 2005CHROMAT_FILE: MSMg01no175_h10.g1 PHD_FILE: MSMg01no175_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGATCCGCGGAATTCCCTTCACGTCTGACTTGATTACAGAAACCCTCT
TCTTGTTAGTTTATAAAGGTAGCAGCAATCTTTAATTGTCTTTATTAAAT
TCTAAACAAGAGGAGCAAGTAAAGTGACTTTTGTACCAAGAAAGTGCATG
ACTTTCAGACACATGCAGGGTTGGGTTGGTGGAGAACCCGGCCAGTAGGA
TTGGGGCTCGAATAGTATACTAGTCTTATGTTCGTGCTTTTAACTTGGTT
GGTAGGGGAAGAGATCAGGAAAGGAGGAGGTTAACGGGGCACTAGGCACC
CAGAGAGCCTCTTGACATCNTTTCCCCCCCCCCCCTGCTAAGACTGTGTG
CTTAGTGAAGAATACTTCTGAACAATAGAATATAAATTTCTCCGTGTGTG
CTGTAGTCTTCAGAATTGTACTTGTAGGGTCTCTGTGCCACTGATCTGTG
AACTTTCAGATAGGAGCGTATGAACTATCCCTAAACCTCACAAGAGAAAT
CAGAGTTGTTCTTAGTGGACTGTGACTACTGACTGGTCATCATAACTCCC
AGAAACACATTTCAGAATGTTGGCTAATCTCTTACTATACTAAAAGACAA
AGATCGGCAAATGATATAACGCTAATTATGTGTCTACCCTGAGATCCTTT
CTGACCTCTTTCCCG
CCTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGC
CCCATTTTTTAATGGCGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT
TCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTT
TTGCCTTGCATAAATAGAGGAGAAAGTGGGGAAAAGTCTTGAAGATATGG
GCACAGGGGACAAATTCCTGAACAGAATATTAATGGTTTGTGCTGTAAGA
TCGAGAATTAGTCATTGNNTTGACTCCCCCCCCCCCCCATGACCAAGAAG
CAACTTGGGGAGGAAAGAGTTTATTCAGCTAGAACTAAAACATTGCTGTT
CATAACTTAAGGAAGCCAGGACTGGAACTCAAGCCGGTTAGAAAGCAGGA
GCTGATGCTAAGTCTTGGACGGACGTTTCTTACCGCCTTGTTCCAGATCA
AACGTAACTTTTTCCATATACCCCTTTTTGTAAAGAACTGAAGCTTTGTA
CCCTTTTTATTATCATCATCTGTGGGTGTCTTTTTTTTCCCCTTTCGCCT
AAGACCATAACCCAACTTTTAGGCCCCTTTAGCCAAATTCTCATTTTTCT
TTATTCATCCATTTCACCTACACATCCCCCGTCCCTATTCACCCATCGCT
GTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h10.b1 MSMg01no175_h10.b1 CHROMAT_FILE:
MSMg01no175_h10.b1 PHD_FILE: MSMg01no175_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:32 2005
         (312 letters)



>mm_chr10_36696442_36697153
          Length = 712

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcccttcacgtctgacttgattacagaaaccctcttcttgttagtttataaaggta 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcccttcacgtctgacttgattacagaaaccctcttcttgttagtttataaaggta 267

                                                                       
Query: 68  gcagcaatctttaattgtctttattaaattctaaacaagaggagcaagtaaagtgacttt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcagcaatctttaattgtctttattaaattctaaacaagaggagcaagtaaagtgacttt 327

                                                                       
Query: 128 tgtaccaagaaagtgcatgactttcagacacatgcagggttgggttggtggagaacccgg 187
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 328 tgtaccaagaaagtgcatgactttcagacgcatgcagggttgggttggtggagaacccgg 387

                                                                       
Query: 188 ccagtaggattggggctcgaatagtatactagtcttatgttcgtgcttttaacttggttg 247
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 388 ccagtaggattggggctcgaatagtatactagtcttatgttagtgcttttaacttggttg 447

                                                                       
Query: 248 gtaggggaagagatcaggaaaggaggaggttaacggggcactaggcacccagagagcctc 307
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtaggggaggagatcaggaaaggaggaggttaacggggcactaggcacccagagagcctc 507

                
Query: 308 ttgac 312
           |||||
Sbjct: 508 ttgac 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)