BAC Information

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BAC

Clone NameMSMg01-176C14
Chromosome10 (Build37)
Map Location 87,436,145 - 87,588,944
singlet/doubletdoublet
Overlap genePmch, 4930547N16Rik
Upstream geneStab2, 1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream geneEG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176C14.T7 (MSMg01no176_c14.b1)MSMg01-176C14.TJ (MSMg01no176_c14.g1)
ACCAG370938AG370939
length1,2551,242
length of high quality
(start - end)		686 (131 - 816)695 (133 - 827)
definitionCHROMAT_FILE: MSMg01no176_c14.b1 PHD_FILE: MSMg01no176_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:34 2005CHROMAT_FILE: MSMg01no176_c14.g1 PHD_FILE: MSMg01no176_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,588,259 - 87,588,944)(87,436,145 - 87,436,839)
sequence
NCAGACCTTNNNNNTCATTGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCAAGAATGACCTGGNTTCCGTTTAAATTCTCAANATCCCTGAT
CGAGGACTGGGGAGCCCCTTAAATCACCCCCTTGAAGCATGCTGCTCGAG
AGAAACAGTTGTCTATGTTTCTGGTATGGATGCTTGCATTTTCAGGGCTT
GCATTATAATGAAACAATTTTTAAGTAGTTTGTTTATGTTTTATCTTCGT
ATTTGAAAAGCCATTGAGTTTTAATTTTTCCTGTGTCTTCCAAGGTTAGC
AGGTAAGAATTTCTGTTAAGCAGTATTTCTTACAACAATATATTCCTTAG
GCCATTACCCCTAATAAATAAATGTACCGGTTTTCTCCTCTTCTCTCTTA
TTTTCTCCTTTTTTCTTTCCTATCTTTTCTTTACCATGAGGGGTTGGCTA
TGTGGCCCAAGGTGATCACCAATTCTCAATCTCCTTGTCCATATTTCACA
AATGCTGGGTTATAAACATGCATTACTGTGCCTGGCTTTGATAGATTCTT
CTTGAATAAGTATTTCTAAGGGCAAAAATCGTCAGACATGGCATATGTGA
TGTTTGTTTACATGATACATATCTGTATATGAGGAACTCTGAGAAGTCCT
TCAGTGAAGTAACATGTCTTATGAACCTTGGTACTTCATCTGTGATTTCC
CAAGCTGTTTGACCATACAGTGTCCCCACAAGTTACTGATATTCTATAAT
GTGCTTAAAGGATAATTTGGAAGATACTGTTTTTGGAACATCTCATCTTT
TTGATGGAGATGTTCTTCAGTTAGCTATCACATACACATTTTTGTCAATG
TAAAGACAGTACTTTCAGCTGTTTATCCTGAGATGTGAAAGCTTGCTGGA
ATCTAGTGGTTATCTGCTACCAATCTATTTTCATATTTAAGGCATAATTA
AAGTTTTGCTCTCCTTGGTAATCATGGATTATTTGTCCTTGAATATGAAT
TTCTTCTCCCAAAGGTTTTTCTAATTAACTTTTCCCAATATTTCATACTT
TATTCTTGTACTAATATTTGTTCATTCAAATGTCTTTTCTTATTTATAAA
CAATTTCTTTTCTCCCTTGTTTCATCTTTTGTCTTGATTTACTACTTTTT
CTCCCCCCTTCTCAATTCCGTCTTCCTCCTGATGTCCTTTAGTCGGCTTC
ATATTACATCCTTCTTTTAATTAATCTTACCCTCCATTCTTTTGATCTCT
TTATA

CCTCCCTTTTTNNTACCATGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAGAAGCCCTTCTGGNTGNAA
AACTCATCCCTAGACACACGTTATACTGTACAACTACGATGAAAAAATTA
ATAATAAATGGGCTGGAGAGATGGCTCCGTTGGCAGAGAGCTTGCCATGC
AGACCCAAGGACCTCAGACTGAATCCTTGTAGCCCACATAGAAAAACCAG
ATGTGGTGATATTCAACTCTTGTATCCCATCTGGGAAGGCAGATAGAGCA
GAGCCCAGGACCCCACTGGCCAGTCAGCCTCATCTACCTGGAGAGTTATA
AGTCAGGGATGGACACTGTTTCACAGAACAAGGTATATAGCAACTGAGGA
GAGACACCCAATATTGTCCTCTGACTTCTGAATGCACTCATATACACAAT
GAACTTTGTCAGAGTTGTTCTACCCCTGAGAAGAAGATGTGAGAAGTGAC
TTCTCGGGTATGACAGTTCTTTTCACACAAGCTCTTTCCCATTTATTAGA
CATTTTTGGATAATTTGTATATACCTAGTTGTCACCATCACTCTTCTCAT
ACAGTTGTATGTTTGTTCAGAATCCTGGAGGTTGTTTTCTTGGGAAGTAA
AAAAAACAAAACCACATGGGCATGCTGGGGTTTTCCTATTAACTTCTAGA
AAGATAGAAACAGCTATTCAGTGGCAAAATAAAGAAAGCCCCACACGACA
GTGAGCCTGACTAATCAGACTGTAGATCTTGGAGGAAACCCATGGTATGA
GAGCAATTCCCTTTGAGAATCTGGAAAACAAACCAGGGCTGTGCCAGTAA
TATAATTCTGCTCACCCTTTCTCTGATTCAAACTAGGATAGAAAGGAATG
CCAGTCTATTAGTCTATGAAGGGAAAAGCAGGGATATTGTTTATCCTCCC
CCCCACAATGGAGACCCTTTTCTAATTGCAGATTCTCCCGGGCTTTACTC
TACCCTACTTTTCCCCAAAAATGATTACCTTCCACCGGAACCTTTTCTCT
CTTGGTTTCCCCAAAGAAAAAAAGGTTTGGTTGTGGAAATCTTTTTAACG
GGATCCCCTTGAATGGACTTTCCTTAATAATGGGGTAAAAAACTCCTCTC
CCCACAACAAATATTTATAACCCCTTCGTTAAAATATAAGCGTGCTATTA
TTATCCAGTTTCTCAATCCTATAATACCCTTCTCCTTGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_c14.b1 MSMg01no176_c14.b1 CHROMAT_FILE:
MSMg01no176_c14.b1 PHD_FILE: MSMg01no176_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
         (686 letters)



>mm_chr10_87587963_87589048
          Length = 1086

 Score = 1272 bits (658), Expect = 0.0
 Identities = 679/686 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaagcatgctgctcgagagaaacagttgtctatgtttctggtatggatgcttgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 cttgaagcatgctgctcgagagaaacagttgtctatgtttctggtatggatgcttgcatt 923

                                                                       
Query: 61  ttcagggcttgcattataatgaaacaatttttaagtagtttgtttatgttttatcttcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ttcagggcttgcattataatgaaacaatttttaagtagtttgtttatgttttatcttcgt 863

                                                                       
Query: 121 atttgaaaagccattgagttttaatttttcctgtgtcttccaaggttagcaggtaagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 atttgaaaagccattgagttttaatttttcctgtgtcttccaaggttagcaggtaagaat 803

                                                                       
Query: 181 ttctgttaagcagtatttcttacaacaatatattccttaggccattacccctaataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttctgttaagcagtatttcttacaacaatatattccttaggccattacccctaataaata 743

                                                                       
Query: 241 aatgtaccggttttctcctcttctctcttattttctccttttttctttcctatcttttct 300
           |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 742 aatgtaccagttttctcctcttctctcttattttctccttccttctttcctatcttttct 683

                                                                       
Query: 301 ttaccatgaggggttggctatgtggcccaaggtgatcaccaattctcaatctccttgtcc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 682 ttaccatgaggggttggctatgtggcccaaggtgatcacaaattctcaatctccttgtcc 623

                                                                       
Query: 361 atatttcacaaatgctgggttataaacatgcattactgtgcctggctttgatagattctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atatttcacaaatgctgggttataaacatgcattactgtgcctggctttgatagattctt 563

                                                                       
Query: 421 cttgaataagtatttctaagggcaaaaatcgtcagacatggcatatgtgatgtttgttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttgaataagtatttctaagggcaaaaatcgtcagacatggcatatgtgatgtttgttta 503

                                                                       
Query: 481 catgatacatatctgtatatgaggaactctgagaagtccttcagtgaagtaacatgtctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catgatacatatctgtatatgaggaactctgagaagtccttcagtgaagtaacatgtctt 443

                                                                       
Query: 541 atgaaccttggtacttcatctgtgatttcccaagctgtttgaccatacagtgtccccaca 600
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 442 atgaaccttggtacttcatctgtgattccccaagctgtttgaccatacagtgtctccaca 383

                                                                       
Query: 601 agttactgatattctataatgtgcttaaaggataatttggaagatactgtttttggaaca 660
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtcactgatattctataatgtgcttaaaggataatttggaagatactgtttttggaaca 323

                                     
Query: 661 tctcatctttttgatggagatgttct 686
           ||||||||||||||||||||||||||
Sbjct: 322 tctcatctttttgatggagatgttct 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no176_c14.g1 MSMg01no176_c14.g1 CHROMAT_FILE:
MSMg01no176_c14.g1 PHD_FILE: MSMg01no176_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
         (695 letters)



>mm_chr10_87435945_87437039
          Length = 1095

 Score = 1305 bits (675), Expect = 0.0
 Identities = 690/695 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacgatgaaaaaattaataataaatgggctggagagatggctccgttggcagagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacgatgaaaaaattaataataaatgggctggagagatggctccgttggcagagagct 260

                                                                       
Query: 61  tgccatgcagacccaaggacctcagactgaatccttgtagcccacatagaaaaaccagat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgccatgcagacccaaggacctcagactgaatccttgtagcccacatagaaaaaccaggt 320

                                                                       
Query: 121 gtggtgatattcaactcttgtatcccatctgggaaggcagatagagcagagcccaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtgatattcaactcttgtatcccatctgggaaggcagatagagcagagcccaggacc 380

                                                                       
Query: 181 ccactggccagtcagcctcatctacctggagagttataagtcagggatggacactgtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactggccagtcagcctcatctacctggagagttataagtcagggatggacactgtttc 440

                                                                       
Query: 241 acagaacaaggtatatagcaactgaggagagacacccaatattgtcctctgacttctgaa 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 acagaacaaggtatatagcaactgaggagagacacccaagattgtcctctgacttctgaa 500

                                                                       
Query: 301 tgcactcatatacacaatgaactttgtcagagttgttctacccctgagaagaagatgtga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgcactcatatacacaatgaactttgtcagagttgttctacccatgagaagaagatgtga 560

                                                                       
Query: 361 gaagtgacttctcgggtatgacagttcttttcacacaagctctttcccatttattagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtgacttctcgggtatgacagttcttttcacacaagctctttcccatttattagaca 620

                                                                       
Query: 421 tttttggataatttgtatatacctagttgtcaccatcactcttctcatacagttgtatgt 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tttttggataatttgtatatacctagttgtcaccatcacccttctcatacagttgtatgt 680

                                                                       
Query: 481 ttgttcagaatcctggaggttgttttcttgggaagtaaaaaaaacaaaaccacatgggca 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ttgttcagaatcctggaggttgtttttttgggaagtaaaaaaaacaaaaccacatgggca 740

                                                                       
Query: 541 tgctggggttttcctattaacttctagaaagatagaaacagctattcagtggcaaaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctggggttttcctattaacttctagaaagatagaaacagctattcagtggcaaaataa 800

                                                                       
Query: 601 agaaagccccacacgacagtgagcctgactaatcagactgtagatcttggaggaaaccca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaaagccccacacgacagtgagcctgactaatcagactgtagatcttggaggaaaccca 860

                                              
Query: 661 tggtatgagagcaattccctttgagaatctggaaa 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 861 tggtatgagagcaattccctttgagaatctggaaa 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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