BAC Information

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BAC

Clone NameMSMg01-176M24
Chromosome10 (Build37)
Map Location 111,853,434 - 111,854,058
singlet/doubletsinglet
Overlap geneKcnc2
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176M24.T7 (MSMg01no176_m24.b1)MSMg01-176M24.TJ (MSMg01no176_m24.g1)
ACCAG371398AG371399
length1,2081,248
length of high quality
(start - end)
629 (129 - 757)331 (124 - 454)
definitionCHROMAT_FILE: MSMg01no176_m24.b1 PHD_FILE: MSMg01no176_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:02 2005CHROMAT_FILE: MSMg01no176_m24.g1 PHD_FILE: MSMg01no176_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATTTTNNNNNTTTCATTGGGCGCTNACGACTCCTAAGGGAGAGGATCC
GCGGAATTCTATCACTTTATATGAACCTGTAAAAATTGCTATTTTTATGG
TTTATTCCTGTGTGTTCGTATATAACTGAAGCATCTTGGAAGGCACCTTC
AGCTTTCAGGATGGAACGTCTTCACTAACTCTGGACTCTCAGATTGAAGA
ACTTTCCATTTACACGACATCCTTCAGTTTTTCCCATGCTTTAATTGATC
TTCACATTGTGCCTGTGAGATAAGACTAAGAAACAAGTGTCTGCATGGTT
TTCATGTTCAAATAGCAAAATCAAAAAACAGCACAAAGGCCACATATTCA
AACGTAAACAAAATTAAGGGATGCTTGAGAGTGTACATAGCTAGGAGCCT
GAATTTCTCTTTAGGCTTTATAAGTCTTTGTTTTAAAGACACTTGATACT
AGAAACTAGCACAAACACCCATATAAAATTGGCTTTGTGTTTCGAACAGA
CTTCTAGGTACCACTCAATCATTGTACCCAATAATGATGCCTGCTGATAA
AGGCTGTCTGAACTTAGCAGATTCACATGGCCATTTTCATTTTATATGTG
TTTCCACTAAAGCATTTATGATTCTCTTTTCTGAAATGTGAAAATATACT
TACAATTTTCTTATACTTTCAAACGATCATATAAACATGAATGTTAACTG
GGACGGAAAATTTTATCACTAACATTTTCCCGGAGAGCTGAAAAAAATTT
ATTACAAGATGTGGATCAAGCTGTTTGTAGATAAAATATTTAGCAAAATA
TCCCCCAGCAAGGAAATTATTATTTTAAGAAAAAAGTGTAAGTATGTAGA
ACAGTGGTTTCGAGGTTGGTCTTATTACAGTGCTTTATTGTCCATGAATG
AGGTCCTCAATCTAGGGAAACTTTTAAGGTCCCCATGAATGATCTAAAAG
TACAGCTTATTTTATTGCTTGGGGAGATTGGGCTTTCAAGTTTAACCAGA
TTTTGAATAAGGATCCCCTTAACAACTTGGAAATTGCATTGGGATTTAAA
GACTTTTGATTATTTGGAAATAATTTGGCTCCTCGTTCCCATAAAAATTT
TTCTCATAATATCTTAACAAACCTCTTTTGCTATTAGGAAAAATGTTCTT
TCTAATACTCATTTCTTTTTTTCTTCTCTTTTTCCCTCTCTTTTTTATTT
GTACCTCC
NNNTTCCTGAGTGGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTAACCCCTAAGCCCCTTACCCCATAAAAA
CACGTAGCTCTTAAGACTCGTGGCTGACATCCTTTATCTCCTGTATGGGA
TGCATGTTGGTTCGGAGCTCCGTAATTAAACATCCTCATGTATTTACATC
AAGATGGTCCTTCGTGATTTTTTGGGTGCACGCCGAATTGGGAATTGGGT
GGGGGTTTCCCCACTAGGTTCTAACAATGTCTGCTCTAGCAAGTGACCCT
TCATCCATATCCCTCTAAGTAGCCCCAATAAAACTCATTGATTCACTATG
TTGAACTTTGATTGTATGGGTACTTTGATCTATTGTGAGAATTCTATCTG
ATTATAGTAGAAGTGTGTGATTTCCACCCCTCAAAAAGTGCATTTCATAC
TATTATTTTATACCCAAGATGACTTAGTGGATTTAGTCTAAGAGTTTAAA
TAATAGTAGATATTTTCCAAGTTTATATAAAATGTAAATACTTAACATAC
CTATATATTAAATTTATAGTCTAGAATATTACTTATGTTTATGATTAGCA
CAAGCAAATATCTAAGTAAATCTCATTTGTAATGTTGATATATTGGTCTT
CACACAATAAATTATATTTGAAAATTCATCCAAATATCTTGAATAATACA
TTTTCACTTGAATATTAAGGATACTAGGGTTTCATGTATCATTGCATTGT
AAATGTTTATTTGAATGTTAGCTTCTTCTATTAATTCCTAAATTTCCTAC
TTTCTTTTATATGCCATTTTTTTCATTTTATGAAAGACCATCCTAAAATC
CCTAGTATTTTCTATTAAAATTTTGGATTTTAAACTACTTGACCTAATTT
ACAATTTGTTTCCCCTTATGTTTTTCCAAGATAAATTGCTTTTTCTTTCT
TTTATAAATACCTCAATGTTTCTTTTTTTTTTTGTCTCTAATACCAATTG
TACATTTTCTTTATTTTGTTATTTATTTTTTCCTCTTTTAATTTCTTCTC
TATTATTTATATTCTCTTAATTATTTTTCTTCCTTGCTTCATCATTTCTC
CTTTTGTCTCTATTATTTACTATATTATTTTCACCCCTCTCTTTCGTTTC
TTCCTCCTCCTCTTTTCCCCCTTATTATTTTCTTTTATTATTCTCTTCTT
ATTTCTCTCCTTTCTTAATCTCTTTCTCCTCTTNCCTTCTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_m24.b1 MSMg01no176_m24.b1 CHROMAT_FILE:
MSMg01no176_m24.b1 PHD_FILE: MSMg01no176_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:02 2005
         (629 letters)



>mm_chr10_111853234_111854262
          Length = 1029

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/629 (99%), Gaps = 4/629 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcatcttggaaggcaccttcagctttcaggatggaacgtcttcactaactctggactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aagcatcttggaaggcaccttcagctttcaggatggaacgtcttcactaactcaggactc 260

                                                                       
Query: 61  tcagattgaagaactttccatttacacgacatccttcagtttttcccatgctttaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagattgaagaactttccatttacacgacatccttcagtttttcccatgctttaattga 320

                                                                       
Query: 121 tcttcacattgtgcctgtgagataagactaagaaacaagtgtctgcatggttttcatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcacattgtgcctgtgagataagactaagaaacaagtgtctgcatggttttcatgtt 380

                                                                       
Query: 181 caaatagcaaaatcaaaaaacagcacaaaggccacatattcaaacgtaaacaaaattaag 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatagcaaaatcaaaaaccagcacaaaggccacatattcaaacgtaaacaaaattaag 440

                                                                       
Query: 241 ggatgcttgagagtgtacatagctaggagcctgaatttctctttaggctttataagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgcttgagagtgtacatagctaggagcctgaatttctctttaggctttataagtctt 500

                                                                       
Query: 301 tgttttaaagacacttgatactagaaactagcacaaacacccatataaaattggctttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttttaaagacacttgatactagaaactagcacaaacacccatataaaattggctttgt 560

                                                                       
Query: 361 gtttcgaacagacttctaggtaccactcaatcattgtacccaataatgatgcctgctgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttcgaacagacttctaggtaccactcaatcattgtacccaataatgatgcctgctgat 620

                                                                       
Query: 421 aaaggctgtctgaacttagcagattcacatggccattttcattttatatgtgtttccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggctgtctgaacttagcagattcacatggccattttcattttatatgtgtttccact 680

                                                                       
Query: 481 aaagcatttatgattctcttttctgaaatgtgaaaatatacttacaattttcttatactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagcatttatgattctcttttctgaaatgtgaaaatatacttacaattttcttatactt 740

                                                                       
Query: 541 tcaaacgatcatataaacatgaatgttaactgggacggaaaattttatcactaacatttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaacgatcatataaacatgaatgttaactgggacggaaaattttatcactaacatttt 800

                                        
Query: 601 cccggagagctgaaaaaaatttattacaa 629
           ||||||||||||||||    |||||||||
Sbjct: 801 cccggagagctgaaaa----ttattacaa 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)