BAC Information

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BAC

Clone NameMSMg01-177G05
Chromosome10 (Build37)
Map Location 71,827,427 - 71,828,392
singlet/doubletdoublet
Overlap genenone
Upstream geneIpmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177G05.T7 (MSMg01no177_g05.b1)MSMg01-177G05.TJ (MSMg01no177_g05.g1)
ACCAG371792AG371793
length720723
length of high quality
(start - end)		243 (67 - 309)580 (77 - 656)
definitionCHROMAT_FILE: MSMg01no177_g05.b1 PHD_FILE: MSMg01no177_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:57 2005CHROMAT_FILE: MSMg01no177_g05.g1 PHD_FILE: MSMg01no177_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,828,151 - 71,828,392)(71,827,427 - 71,828,003)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAGNGAGGCCGCGGNCCA
TTATGTTTCAAAAAACAGGCTGGCTCTTTTGTCCTACTATATCGAGGCAT
GTTTTAAGCTAACCCTTCTCATTTGTCAAGCATCTTTAAAAAATATATTA
GCTTTCCAGTCAGAGAAATAACATATTTCCATTTGAAAAAGTAAACAAAC
TTAGGTTCTTAATATACTATTATCTTGCTGAAGACTCAGAGAGTGTTTCA
GGGAAAACCATAAATTCATAAATATGGGGAAAGTAGAAATTTATTTTGAT
CTCTTCTCTTAGATAGATTAAANAGGAAGTAATGTCTCTCATGCCTGGGG
TGGAAGCCGCTGTCTAGAGATGTCTTACCAGAAGCCAGTTGTGGATGCTG
ACATTCTTCCATGTGGAGATGTCCAGCCTTGGGCTGCAATCCCAGAGACA
GTGTGTGAGCCCATGGAATAAAGCAAGAATTTCCTCTTATCTTGAAACAG
TTACTGAGTCTGCATTAAGTTATGCTTATTTAAAAAAAGTATTCCCAGTA
CTCATAAAACACCTGGAGAGATATGTGTTTTAAAAAGAATCTACAGCATA
TGCTAATTTGAATATTAGTAAGGCAGCTAGAATATAGACTCCAATAGTTT
TTTTTTTTGACCCAATAACGACCCCAGTCTTTTATTTAACATTAATTTGG
ACCCCAGATCACTGATTCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCAAAGGTATATTTCCCACAT
CCTGTATCACAGACTTAAGAAAAAGGCATACTCAGCCTCTCAGTTAAAAT
TGACTTAGAATCAGAGGGAAATGCTCTCAGAGATTAATGGGAAAATAATA
TTAACGGTGAGCAATGAAAACTAAACAACAGTTATTAATTTATGAATTAC
AATAAAATATTGGTGATTGTCTCTATACAATGTTTAATTGTTTTGTTGTT
TTAAAGCAGTGGGGAAGGAGGTGTTGATGTTATAACTACACTACACTGCT
GGTGTAACTTAGCTAAATGAAATACAACTATTTAGTGATAAGGATCAGTG
GCTTTGGTCCAAATTAATGTTAATTAAAGGCTGGGGTCATTATTGGGTCA
GGACTGGAAACTATTTGAGTCTATATTCTAGCTGCCTTACTAATATTCAA
ATTAGCATTTGCTGTAGATTCTTTTTAAAACACATATCTCTCCAGGTGTT
TTATGAGTACTGGGAATACTTTTTTTATATAAGCATAACTTAATGCAGAC
TCAGGAACTGTTTCAAGATAAGAGGAAATTCTTGCTTTATTCCATGGGCT
CACACACTGTCTCTGGGATTGCAGCCCAAGGCTGGACATCTCCACATGCA
AGAATGTCAGCATCCACAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_g05.b1 MSMg01no177_g05.b1 CHROMAT_FILE:
MSMg01no177_g05.b1 PHD_FILE: MSMg01no177_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
         (243 letters)



>mm_chr10_71827951_71828593
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctggctcttttgtcctactatatcgaggcatgttttaagctaacccttctcatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 aggctggctcttttgtcctactatatcgaggcatgttttaagctaactcttctcatttgt 383

                                                                       
Query: 61  caagcatctttaaaaaatatattagctttccagtcagagaaataacatatttccatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caagcatctttaaaaaatatattagctttccagtcagagaaataacatatttccatttga 323

                                                                       
Query: 121 aaaagtaaacaaacttaggttcttaatatactattatcttgctgaagactcagagagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 aaaagtaaacaaacttaggttcttaatatactattatcttgctgaagactcagagagtgc 263

                                                                       
Query: 181 ttcagggaaaaccataaattcataaatatggggaaagtagaaatttattttgatctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcagggaaaaccataaattcataaatatggggaaagtagaaatttattttgatctcttc 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no177_g05.g1 MSMg01no177_g05.g1 CHROMAT_FILE:
MSMg01no177_g05.g1 PHD_FILE: MSMg01no177_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
         (580 letters)



>mm_chr10_71827227_71828206
          Length = 980

 Score =  969 bits (501), Expect = 0.0
 Identities = 558/577 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtccaaaggtatatttcccacatcctgtatcacagacttaagaaaaaggcatactcagc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtccaaaggcatatttcccacatcctgtatcacagacttaagaaaaaggcatactcagc 260

                                                                       
Query: 61  ctctcagttaaaattgacttagaatcagagggaaatgctctcagagattaatgggaaaat 120
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| 
Sbjct: 261 ctctcagttaaaattgacttagaatcagagggaaatgctcttggagattaatggggaaag 320

                                                                       
Query: 121 aatattaacggtgagcaatgaaaactaaacaacagttattaatttatgaattacaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattaacggtgagcaatgaaaactaaacaacagttattaatttatgaattacaataaa 380

                                                                       
Query: 181 atattggtgattgtctctatacaatgtttaattgttttgttgttttaaagcagtggggaa 240
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 381 atattggtgattgtctctatacaatgtttacttattttgttgttttaaagcagtggggaa 440

                                                                       
Query: 241 ggaggtgttgatgttataactacactacactgctggtgtaacttagctaaatgaaataca 300
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 441 ggaggtgttgatgttataactacactacactgctggtgtaactttgctaaatgaaatata 500

                                                                       
Query: 301 actatttagtgataaggatcagtggctttggtccaaattaatgttaattaaaggctgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatttagtgataaggatcagtggctttggtccaaattaatgttaattaaaggctgggg 560

                                                                       
Query: 361 tcattattgggtcaggactggaaactatttgagtctatattctagctgccttactaatat 420
           ||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 561 tcattattggaccaggactggaaactatttgagtctatattctagcccccttactaatat 620

                                                                       
Query: 421 tcaaattagcatttgctgtagattctttttaaaacacatatctctccaggtgttttatga 480
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaattagcatttgctgaagatcctttttaaaacacatatctctccaggtgttttatga 680

                                                                       
Query: 481 gtactgggaatactttttttatataagcataacttaatgcagactcaggaactgtttcaa 540
           ||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||
Sbjct: 681 gtactgggaatactttttttaaataaacataacttaatgtagactcagtaactgtttcaa 740

                                                
Query: 541 gataagaggaaattcttgctttattccatgggctcac 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gataagaggaaattcttgctttattccatgggctcac 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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