BAC Information

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BAC

Clone NameMSMg01-177J15
Chromosome10 (Build37)
Map Location 43,190,395 - 43,190,713
singlet/doubletsinglet
Overlap genenone
Upstream geneLace1, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155
Downstream geneAK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177J15.T7 (MSMg01no177_j15.b1)MSMg01-177J15.TJ (MSMg01no177_j15.g1)
ACCAG371942AG371943
length707738
length of high quality
(start - end)
356 (15 - 370)---
definitionCHROMAT_FILE: MSMg01no177_j15.b1 PHD_FILE: MSMg01no177_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:12 2005CHROMAT_FILE: MSMg01no177_j15.g1 PHD_FILE: MSMg01no177_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATTCGAAGAGGATCCGCGGAATTCCACACTCTTCCACCTTTGTC
TACACACAGACACATAATTAAAAATGATAAAAGTAAATCCTTTTAAAACA
CAAAATGCAATGGTATATAAGTGTTAAAGCTGTTAATAGTACATGCATTT
AATCACAGCAGAGGGAGGCAGAGGCAGATGCATCTGAGTTTGAGGCTAGC
CTGGTCTACAAAGTGAGTTCCAGGGTAGTCAAGGCTATACAGAGAAACCC
TGTCTTGAATCCACCCCCAAATGAATATATGCACACAGATACATCAAACT
AAATACCTTATAGAAATGAAGTCACGAGCTGGGTTTCCCAACTGTGGTCC
CAACACTCAGGAGGCTGAGGCATAGGATGAGTAAGAGTTTGACCCCACCC
TGGGCTGCATGATGAGCTGTAAGTCACCTGGGCGATAATGAGACCCCGTC
TCATAAAATAACAATTATCTGAGCATGATGGCACTCACCTTTAATCCCAG
CACCTGGGAGGTTTATTTATGCTATATTTCTGAGTTCGAGGCCCCGCCCG
GTTTACTGAATGACCCCCAGGATGCCCGCACTAATTCGAGAAACCCTGTC
CCGGAAATATCAAAATTTTTCCCCTACAATCTCTTTAACACCCTTCCTCT
TTCTCCCCCAATTTTCTCCATTGTTTGTCCCGTTCCTTTTCCTTATTTCC
TCGCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACTCGCGAAATTCTCTGACTGACCTGTTTACTAATTA
GTTTGATCACCGAAGCATTTGACCTGACTTGCTTACATCCTGTAAACTGC
TGGAAAGGTTTGGTTAGATGATCAATGCTATTTCGCATCGCCTTGCCTGC
TTTCCTAATGGAAGTTCTGTGACGCAGACATGCACTTATTCTGAGTCATC
ACCGGATATAAATGAGCATTTCTCATGAATTCCCACCTGAGGTATCCCTG
AGGAGCTACAAATATGTTCTTATTATTTGCTGGAGTTGCACTACTGATTT
TGGTACCTGTTAACTGCTGACATTGTCTCCCTGAAACTGCTGATACCGTT
AGGCTACTTTACCGCCTCCGCAATATGTTCAAAGCTCTCGCGAATTCTGC
CTGCTTTGGAGTGCGAATTGCCTGAACTATGGCTCCTTTGACCAGTTACC
TGTAGTGCACATCACGTCCTCAAGGCCTTATGACTCCGATCCTGTATCCA
TAGCTCACATTGAGTCTCCTGAGTTTTAAATGCTGAGATGGTTGTTATGA
TTATATCATGGTTGGTCTCACATGTTAAATATCTCATGGCCTGTCCCTGA
TTTAATACCTCTTCTCGGAAGCACTCCTGACCGTCGAGCATGCCTCAGAG
CACTGTGCCTGTCTCCGGTCCAGATGATCCCCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_j15.b1 MSMg01no177_j15.b1 CHROMAT_FILE:
MSMg01no177_j15.b1 PHD_FILE: MSMg01no177_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:12 2005
         (356 letters)



>mm_chr10_43190395_43191150
          Length = 756

 Score =  547 bits (283), Expect = e-160
 Identities = 311/321 (96%), Gaps = 4/321 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattccacactc-t-tccacctttgtctacacacagacacataattaaaaatgataaaa 68
           |||||||| |||| | |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattccatactcatgt--acctttgtctacacacagacacataattaaaaatgataaaa 262

                                                                       
Query: 69  gtaaatccttttaaaacacaaaatgcaatggtatataagtgttaaagctgttaatagtac 128
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatccttttaaaagacaaaatgcaatggtatataagtgttaaagctgttaatagtac 202

                                                                       
Query: 129 atgcatttaatcacagcagagggaggcagaggcagatgcatctgagtttgaggctagcct 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcatttaatcacagcagagggaggcagaggcagatgcatctgagtttgaggctagcct 142

                                                                       
Query: 189 ggtctacaaagtgagttccagggtagtcaaggctatacagagaaaccctgtcttgaatcc 248
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 141 ggtctacaaagtgagttccagggtagtcaaggctacacagagaaaccctgtcttgaatcc 82

                                                                       
Query: 249 acccccaaatgaatatatgcacacagatacatcaaactaaataccttatagaaatgaagt 308
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 81  acccccaaatgaatatatgcacacagatacatcaaacaaaataccttatagtaatgaagt 22

                                
Query: 309 cacgagctgggtttcccaact 329
           || ||||||||||||||||||
Sbjct: 21  caagagctgggtttcccaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)