Query= MSMg01no177_m19.b1 MSMg01no177_m19.b1 CHROMAT_FILE:
MSMg01no177_m19.b1 PHD_FILE: MSMg01no177_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:26 2005
(239 letters)
>mm_chr10_63336970_63337608
Length = 639
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1 ttttaatatttacacatctaatgagaatggtaactgtctgacatgcacagcattcaaaga 60
||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct: 439 ttttaatatttacacatctaatgagaatggtgactgtctcacatgcacaccattcaaaga 380
Query: 61 tcctagcactcagcaggctaaggagaactacaagtttgacgcagactgaggtattcaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcctagcactcagcaggctaaggagaactacaagtttgacgcagactgaggtattcaggg 320
Query: 121 aagccctgttccagataatgaacagtaacaacaagactgcttataatgcttgattgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagccctgttccagataatgaacagtaacaacaagactgcttataatgcttgattgaaaa 260
Query: 181 gggattctggccccttcctttcagagtagctttaagaacgtaactcaaacattagcaca 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gggattctggccccttcctttcagagtagctttaagaacgtaactcaaacattagcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no177_m19.g1 MSMg01no177_m19.g1 CHROMAT_FILE:
MSMg01no177_m19.g1 PHD_FILE: MSMg01no177_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:26 2005
(610 letters)
>mm_chr10_63164883_63165887
Length = 1005
Score = 1073 bits (555), Expect = 0.0
Identities = 595/611 (97%), Gaps = 9/611 (1%)
Strand = Plus / Plus
Query: 1 tcctctttcagttcatggaccaagagactattacacctccaatactgtaaaagcctgggt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttttcagttcatggaccaagagactattacacctccaatactgtaaaagcctgggt 260
Query: 61 tgattgcatacagtgaagaagacatacatggtttgtaccagggccattgttactgtgagc 120
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 261 tgattgcatacagtgaagaagacatacatggtttgcaccagggccatggtt-----gagc 315
Query: 121 ccagtatattatacacatttgttcatttgacattaactgaacacctcccaatgcatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccagtatattatacacatttgttcatttgacattaactgaacacctcccaatgcatttat 375
Query: 181 tgattttataagcattttttgaattacctcttcctataatagaactcactgataaactcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgattttataagcattttttgaattacctcttcctataatagaactcactgataaactcc 435
Query: 241 ttttaaggattcagcctgtttttcctaccaaaataaatacattgcccaaaatttgggctc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttttaaggattcagcatgtttttcctaccaaaataaatacattgcccaaaatttgggctc 495
Query: 301 tcagaaaaaagattaaatatttttattttattttttattgtggttctaggggttgaatga 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcagaaaaaagattaaatatttctattttattttttattgtggttctaggggttgaatga 555
Query: 361 ggagccttacttgtgctgggcaggtattcccctctgatctgtgtgtccaggtgaagataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggagccttacttgtgctgggcaggtattcccctctgatctgtgtgtccaggtgaagataa 615
Query: 421 agcagcctaaagcaagggcttgaacccaatggatggtctccatattgagatttgctggca 480
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 agcagc-taaagcaagggcttgaacccaatggatggtctccacattgagatttgctggca 674
Query: 481 ttagttatttgattcctagaggattcatccagtgtcaataaaagttcctccttacccctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttagttatttgattcctagaggattcatccagtgtcaataaaagttcctccttacccctc 734
Query: 541 tcctctgctttgcacgcattcagagactgtcttggctttgttctca-gagtctttctttt 599
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 735 tcctctgctttgcacgcattcagagactgtcttggctttgttctcacgagtcgt-ctttt 793
Query: 600 cc-aatttctt 609
|| ||||||||
Sbjct: 794 cccaatttctt 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1005
Length adjustment: 10
Effective length of query: 600
Effective length of database: 995
Effective search space: 597000
Effective search space used: 597000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
