BAC Information

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BAC

Clone NameMSMg01-178D07
Chromosome10 (Build37)
Map Location 104,151,507 - 104,152,159
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178D07.T7 (MSMg01no178_d07.b1)MSMg01-178D07.TJ (MSMg01no178_d07.g1)
ACCAG372364AG372365
length734731
length of high quality
(start - end)		686 (46 - 731)653 (77 - 729)
definitionCHROMAT_FILE: MSMg01no178_d07.b1 PHD_FILE: MSMg01no178_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:57 2005CHROMAT_FILE: MSMg01no178_d07.g1 PHD_FILE: MSMg01no178_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACAAAGAACTCATACAGCTGATAAAGACTTTCAGAAAAGTAGG
TGGATAAAAACTAAAAAATTCCGTAGCAATCCTATATACAAATAGCAAAT
GGACTAAGAAACAAATAGGGGAAAAACAACCTTTACAGTAGCCTCAAATA
ATACAATATATCTTGAGAATTACTCTAACTAAGCAAGCAAAAGACTTATA
TGATAAAAATGTCAAGAATATATCAGAAGATGGAAAATCTCCCGTGCTAA
TGGATTGGTAGGATTAACATGGAAAAAATGGCCATCCTAACAAAAGCAAT
TTACAGATTTATTATAATTCCCATCAAAATTCTAACAGAGTTCTTAACAG
ATCTTTGACAGAAAATCCTCATCTTCATATGGAAAAACAAAATACCCAGT
ATAGCTAAAACATTCCTGAGCAATAAAGGAACGTCTCTAGTTCTCATTGT
TCCCAATTTCAAGTTGCCCTATAAAGCTATAATAATAAAAATTATTATTG
GCACAAAACAGACATGGTGATCAAGAGAATTGAAGAATGATATATAAATT
CATAAACCCATAGACACCTTATTTCTTCTACAAGAAACATCACACACACA
CACACACACACACACACACACACACACACACACACACACACACACCCCAA
ATCAGGAAATACACAAAGGAAAAAAGACAGTATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAATCCCAATACTTAATTAGTT
GTATAACCTTTGCTAAGCTACTTAGTCTTTGTAAGTTTGGATTAGTACAT
TACTTTGCAGTATGATACAGTATATGAATAAGAAAACCTTTCTCATAGAA
ATACTTAGACATAAGAGATGTAGATAGTCCCAGGTAAAATGCACACAGAA
AATACATAGAGGATAATGGCCTTTTGAAATAAGTAACCGTCTCCATTACC
TCCATCTCCTTTGCATTCCTTTCTCTATGGTTCTGTCTGCATTCTCCTCG
AGATTTTCCAGTTTACCTCCTCTGTTTTCTAAGGAGGCTTGCTTTCATTC
ATATTCTAGTCTTCTGCCAGGATGATCTTCCTTTATAAGATAAGAGCTAT
CTTATAAAGCCCTTAATGCTTCAGATCACTCCTCATAGCTGCAGGAATAA
AGCTCACATTTCGCAGTCTTATGTGAGACATTCAACATCTTATGATGTGT
GTCCACAAATTCATCTTTATTCCTTACTCTTCTCCCGCAGGAACAATTAT
AATCAACTCTGCATAACTTCCTGTAATCAAATATTCAACCTGTATTCCAC
AGACTGTCAGGTTATTACTACTATTCAGAGAATGGCTCTTATCCCTTTGC
CAAAAGCAAATTCAGCTCCTACTCTAAGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_d07.g1 MSMg01no178_d07.g1 CHROMAT_FILE:
MSMg01no178_d07.g1 PHD_FILE: MSMg01no178_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
         (653 letters)



>mm_chr10_104151307_104152359
          Length = 1053

 Score = 1180 bits (610), Expect = 0.0
 Identities = 643/654 (98%), Gaps = 2/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatcccaatacttaattagttgtataacctttgctaagctacttagtctttgtaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatcccaatacttaattagttgtataacctttgctaagctacttagtctttgtaagt 260

                                                                       
Query: 61  ttggattagtacattactttgcagtatgatacagtatatgaataagaaaacctttctcat 120
           |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggattagtgcatttttttgcagtatgatacagtatatgaataagaaaacctttctcat 320

                                                                       
Query: 121 agaaatacttagacataagagatgtagatagtcccaggtaaaatgcacacagaaaataca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 agaaatacttagacataagagatgtagatagtcccaggtaaaatgcacacagaagataca 380

                                                                       
Query: 181 tagaggataatggccttttgaaataagtaaccgtctccattacctccatctcctttgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaggataatggccttttgaaataagtaaccgtctccattacctccatctcctttgcat 440

                                                                       
Query: 241 tcctttctctatggttctgtctgcattctcctcgagattttccagtttacctcctctgtt 300
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tcccttctctatggttctgtctgcattcttctcgagattttccagtttacctcctctgtt 500

                                                                       
Query: 301 ttctaaggaggcttgctttcattcatattctagtcttctgccaggatgatcttcct-tta 359
           |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 501 ttcttaggaggctttctttcattcatattctagtcttctgccaggatgatcttc-tgtta 559

                                                                       
Query: 360 taagataagagctatcttataaagcccttaatgcttcagatcactcctcatagctgcagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taagataagagctatcttataaagcccttaatgcttcagatcactcctcatagctgcagg 619

                                                                       
Query: 420 aataaagctcacatttcgcagtcttatgtgagacattcaacatcttatgatgtgtgtcca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aataaagctcacatttcgcagtcttatgtgagacattcaacatcttatgatgtgtgtcca 679

                                                                       
Query: 480 caaattcatctttattccttactcttctcccgcaggaacaattataatcaactctgcata 539
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caaattcatgtttattccttactcttctcccgcaggaacaattataatcaactctgcata 739

                                                                       
Query: 540 acttcctgtaatcaaatattcaacctgtattccacagactgtcaggttattactactatt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acttcctgtaatcaaatattcaacctgtattccacagactgtcaggttattactactatt 799

                                                                 
Query: 600 cagagaatggctcttatccctttgccaaaagcaaattcagctcctactctaagg 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagagaatggctcttatccctttgccaaaagcaaattcagctcctactctaagg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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