BAC Information

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BAC

Clone NameMSMg01-178M01
Chromosome10 (Build37)
Map Location 103,837,385 - 103,910,491
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178M01.T7 (MSMg01no178_m01.b1)MSMg01-178M01.TJ (MSMg01no178_m01.g1)
ACCAG372745AG372746
length710742
length of high quality
(start - end)		488 (45 - 532)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no178_m01.b1 PHD_FILE: MSMg01no178_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:37 2005CHROMAT_FILE: MSMg01no178_m01.g1 PHD_FILE: MSMg01no178_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,837,385 - 103,837,868)(103,910,209 - 103,910,491)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAAACTCCTCTTAATGAAGTATTACTTAGCAAGAACATGTAAAA
AATATTTACGGTTACACACATTCTTCTTTTATACCCATGACTATTTGTTA
GAATTTTTTATATTGTATAAATAGCAATAAATATAAAATACAATGTACAT
GTGTTTGAGGTTGCATGCCTTATTTATTTAAATGACTCTGGAATTCTAAT
TCTTTTCTCTTTCCACTCTACAGGATGCCAAGCTACTATCAGGCTTTCCC
AGTGAAGACATGGGTATGTCCCAAGGCAGTTGACAATGTGGAAAGCAGAG
TCTACATTCAAATTTGTCCAAAATCTTAAAATGAAAATAGAGTTGACATT
GAGATCCCCAAAGAGAGCCCGATAAAGGCCAACATCAATTGTAATAAACA
TTTCACTCATAAACCCAAGCCCTGCCTGCTATAATTTGGTACATAAAACA
AGGTACCCAGAGCTCATGGAAATGTTTCTTTTTAAATGTTTCCTCCAGGG
AGACATTTCTTGTCAGCAAATTATTTTTATTTGAGAGTGACTCGATTTCC
AACTAACAACCTTAAAAATAACCAATTTTGCTGGATTCTAACTGATATGC
CTATTATCATCCCACTTTCTTACCCACCTTTTTGTTTAACCACCCCCTTT
CCCCCCCCCC

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGTATAGATGATTCAGAAAA
TGCAGTTCTTTGAGTAGAACAAATTATTCCTGAAAGATCTCAGCCAGTAT
GCCTCCTGTTTTTATTATCCTACTGCACTCTTATTTTCACATGTAGTTTT
ATATATGACATGTTTGATAGTTGTCTGTTAATGCTAAGTAGACACATGTT
TCCATGTTCACTTTTGACAACTTTCCCTGTGGCCATTATTCATTCATTGG
TATGATTAGATAATACCAGCTGTGAAGAAATATGAATGGAATCAATTAGA
GCAAAATTTAGTTTAGTCTTGGAAGCACTTTTGTCTTTGAAATCTGAACC
CATGATATGGAAAAGTCCTACCCTGCAGGGATATGTACTATGAATTGAAT
CATCATCATAGTGTTACTAGAAATAATGATGATGACAGTGGTCTCTACTC
TTTTGAACTTGATTTCTTATTACTGCCTTCAACTTGTGTACCACTTCCGT
GTTAGCCCCTACCAATTAACCTCTAGCCCTTTACTAGTGTTATAATGTTT
CTACCACTCTCCTCTGTACCCACGCTCAATAACTTCCGTATTGATATTTT
TCTTTTTTGTACTCAAATTTAGCGATTGCACAACAAATCCCACCTGCTTC
TCCCCCCCTATTTATCTTTTTCCCTTCCCCCCAATGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_m01.b1 MSMg01no178_m01.b1 CHROMAT_FILE:
MSMg01no178_m01.b1 PHD_FILE: MSMg01no178_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:37 2005
         (488 letters)



>mm_chr10_103837181_103838068
          Length = 888

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaaactcctcttaatgaagtattacttagcaagaacatgtaaaaaatattta 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcactaaactcctcttaatgaagtattacttagcaaaaacatgtaaaaaatattta 264

                                                                       
Query: 65  cggttacacacattcttcttttatacccatgactatttgttagaattttttatattgtat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cggttacacacattcttcttttatacccatgactatttgttagaattttttataatgtat 324

                                                                       
Query: 125 aaatagcaataaatataaaatacaatgtacatgtgtttgaggttgcatgccttatttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatagcaataaatataaaatacaatgtacatgtgtttgaggttgcatgccttatttatt 384

                                                                       
Query: 185 taaatgactctggaattctaattcttttctctttccactctacaggatgccaagctacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaatgactctggaattctaattcttttctctttccactctacaggatgccaagctacta 444

                                                                       
Query: 245 tcaggctttcccagtgaagacatgggtatgtcccaaggcagttgacaatgtggaaagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaggctttcccagtgaagacatgggtatgtcccaaggcagttgacaatgtggaaagcag 504

                                                                       
Query: 305 agtctacattcaaatttgtccaaaatcttaaaatgaaaatagagttgacattgagatccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctacattcaaatttgtccaaaatcttaaaatgaaaatagagttgacattgagatccc 564

                                                                       
Query: 365 caaagagagcccgataaaggccaacatcaattgtaataaacatttcactcataaacccaa 424
           ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 caaagagagcttgataaaggccaacatcaattgtaataaacatctcactcataaacccaa 624

                                                                       
Query: 425 gccctgcctgctataatttggtacataaaacaaggtacccagagctcatggaaatgtttc 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccctgcccgctataatttggtacataaaacaaggtacccagagctcatggaaatgtttc 684

               
Query: 485 tttt 488
           ||||
Sbjct: 685 tttt 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_m01.g1 MSMg01no178_m01.g1 CHROMAT_FILE:
MSMg01no178_m01.g1 PHD_FILE: MSMg01no178_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:37 2005
         (283 letters)



>mm_chr10_103910009_103910691
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtatagatgattcagaaaatgcagttctttgagtagaacaaattattcctgaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atctgtatagatgattcagaaaatgcagttctttgagtagaacaaattattcctgaaaga 424

                                                                       
Query: 61  tctcagccagtatgcctcctgtttttattatcctactgcactcttattttcacatgtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctcagccagtatgcctcctgtttttattatcctactgcactcttattttcacatgtagt 364

                                                                       
Query: 121 tttatatatgacatgtttgatagttgtctgttaatgctaagtagacacatgtttccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttatatatgacatgtttgatagttgtctgttaatgctaagtagacacatgtttccatgt 304

                                                                       
Query: 181 tcacttttgacaactttccctgtggccattattcattcattggtatgattagataatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcacttttgacaactttccctgtggccattattcattcattggtatgattagataatacc 244

                                                      
Query: 241 agctgtgaagaaatatgaatggaatcaattagagcaaaattta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agctgtgaagaaatatgaatggaatcaattagagcaaaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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