BAC Information

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BAC

Clone NameMSMg01-179N23
Chromosome10 (Build37)
Map Location 128,545,570 - 128,546,225
singlet/doubletsinglet
Overlap genenone
Upstream geneBaz2a, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768
Downstream geneOlfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179N23.T7 (MSMg01no179_n23.b1)MSMg01-179N23.TJ (MSMg01no179_n23.g1)
ACCAG373519AG373520
length731727
length of high quality
(start - end)		646 (37 - 682)656 (66 - 721)
definitionCHROMAT_FILE: MSMg01no179_n23.b1 PHD_FILE: MSMg01no179_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:59 2005CHROMAT_FILE: MSMg01no179_n23.g1 PHD_FILE: MSMg01no179_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAT
GGAGTCACAGATGAACCATGTAACTCCTAGAAGACATTAATTGTTAGACA
TCAGATCTCTCTCTCTCTCCCCCCCCCCCTCTCTCTCTCTCTCTCTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTATTGGCAAGGTTCCGAAAACTAC
ACAGGCTATTACCATTTCCCTTGGTCATCCAACATAATACATGGTAAGAA
CTCCAGTTCTGAGGACACCTCATGCCTTGACTGCAGGCACTGCAGGAAAT
AGAGAAAACAAACTCAAGACACTCAGAGAATTTTCTTCTGGCTACAAGTT
TTCATTGTGCTGAAAAGTTCCATATAGTCTGCTGGGAAGCAAACTCATCA
ATGACCTTACCTAGTGCTACACACTGCATGCTGTGATACTGTGTGCTTGA
CAAAAATGTGTCCACTTGTGCAATAGCAGCAAGACTGTTTGAGATAAGTA
ACCAGTTTATGAATGGATTAGAGACCCGTTTCACAGAACAGAATTATATA
TTTTTGCTGTAAAACTGGATAAAAGCCTATAGATAGGAAGGTCATAGGTT
CAAGTTGTTTTAAATGACACACTGTCAAATACCTTCCAAATCAGTAGTTT
CTCAACCTTCCTAATGCTGTGACCCTTTAATACAGTGGCTCACATTGTGG
TGAACCCACTCATAAGAATATTTTTACTACT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTAGGTTTCACTCTTGTACAAAGCAAATAAGGA
GATTAACCATTATACCCTCTACTTGCTATGGAGTCACACTTCAGGTGCAA
TAATTAACACAGCAGCTTAGTAAATGTGCAGATCCTGCACACGTGTGCTT
AATTACCAAAAAGGAAGCCTGAGGATATTTGATATGTTTTGTTGATGTTT
TAGAAAATTTAAATATGATATGAAGAAATTCTTTGGAGAATATTCTTATT
TCCTATGAATATTTTTGTAGTATAAGGGAGGATTATATTATCATAGCATA
TTACATATTATTATATACAGCATATAGCTTATATATACTATCTATATCTT
TGATTTGACTCTGCTCTTATTTTGAATATACCTGAGTCATTAGAAGATGT
TTGATAGAAATAAATAATAGCTATGTACACAGTGAAGACATAAAACTTTA
TTTTCACAATTAAAACCATGGAAACAATGAAAAGACCTTAATAGCATATC
AATAATTTGGTCCAAATTACTTTTATGATAATTAATGGATGATTACTGGA
TGATTCTTATCTAACCTCTCCAAACCCATCCATGATTTTCAGTTTCCCCA
GGAAAAAAAATATTCCATCACCGAAAAATACTTACACATGGTACAAGCTC
CATAAATTAAAGACAGGAACATAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_n23.g1 MSMg01no179_n23.g1 CHROMAT_FILE:
MSMg01no179_n23.g1 PHD_FILE: MSMg01no179_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:59 2005
         (656 letters)



>mm_chr10_128545370_128546425
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 651/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaggtttcactcttgtacaaagcaaataaggagattaaccattataccctctacttg 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||
Sbjct: 201 tcttaggtttcactcttgtacgaagcaaataaggagattaaccattataaactctacttg 260

                                                                       
Query: 61  ctatggagtcacacttcaggtgcaataattaacacagcagcttagtaaatgtgcagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatggagtcacacttcaggtgcaataattaacacagcagcttagtaaatgtgcagatcc 320

                                                                       
Query: 121 tgcacacgtgtgcttaattaccaaaaaggaagcctgaggatatttgatatgttttgttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacacgtgtgcttaattaccaaaaaggaagcctgaggatatttgatatgttttgttga 380

                                                                       
Query: 181 tgttttagaaaatttaaatatgatatgaagaaattctttggagaatattcttatttccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttagaaaatttaaatatgatatgaagaaattctttggagaatattcttatttccta 440

                                                                       
Query: 241 tgaatatttttgtagtataagggaggattatattatcatagcatattacatattattata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatatttttgtagtataagggaggattatattatcatagcatattacatattattata 500

                                                                       
Query: 301 tacagcatatagcttatatatactatctatatctttgatttgactctgctcttattttga 360
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatagtatatagcttatatatactatctatatctttgatttgactctgctcttattttga 560

                                                                       
Query: 361 atatacctgagtcattagaagatgtttgatagaaataaataatagctatgtacacagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatacctgagtcattagaagatgtttgatagaaataaataatagctatgtacacagtga 620

                                                                       
Query: 421 agacataaaactttattttcacaattaaaaccatggaaacaatgaaaagaccttaatagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacataaaactttattttcacaattaaaaccatggaaacaatgaaaagaccttaatagc 680

                                                                       
Query: 481 atatcaataatttggtccaaattacttttatgataattaatggatgattactggatgatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatcaataatttggtccaaattacttttatgataattaatggatgattactggatgatt 740

                                                                       
Query: 541 cttatctaacctctccaaacccatccatgattttcagtttccccaggaaaaaaaatattc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttatctaacctctccaaacccatccatgattttcagtttccccaggaaaaaaaatattc 800

                                                                   
Query: 601 catcaccgaaaaatacttacacatggtacaagctccataaattaaagacaggaaca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catcaccgaaaaatacttacacatggtacaagctccataaattaaagacaggaaca 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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