Query= MSMg01no180_g02.b1 MSMg01no180_g02.b1 CHROMAT_FILE:
MSMg01no180_g02.b1 PHD_FILE: MSMg01no180_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:36 2005
(647 letters)
>mm_chr10_35639922_35640969
Length = 1048
Score = 1166 bits (603), Expect = 0.0
Identities = 636/647 (98%)
Strand = Plus / Plus
Query: 1 gaatgcctgttttgagcaagtctgttctgatcatctcaaattctagggccttgtatcatc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatggctgttttgagcaagtctgttctgatcatctcaaattctagggccttgtatcatc 260
Query: 61 ctgcgttgcggtcaaagaactagagagaaaaggcatgataaaataagaaaatcctaagga 120
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctgagttgcagtcaaagaactagagagaaaaggaatgataaaataagaaaatcctaagga 320
Query: 121 tacatctctagaatgctgagtgaaagaggggttgtgataggtatccctagtggtgactgt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tacatctctagaatgctgagtgaaagaggggttgtgatagatatccctagtggtgactgt 380
Query: 181 gaaatactgagtcagcatggtgcatcatagaagagaaagaagtactatgccaacagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatactgagtcagcatggtgcatcatagaagagaaagaagtactatgccaacagaaat 440
Query: 241 ctttaacctgtacatcaccacttttctccctaaatggctgagaagaagctgaagagagtg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ctttaacctgtacatcaccacttttctccctaaacggctgagaagaagctgaagagagtg 500
Query: 301 atttgtgcttgatttgtttctgaagcttagagaatgtaatgagagcaggaatcatcgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgtgcttgatttgtttctgaagcttagagaatgtaatgagagcaggaatcatcgagc 560
Query: 361 cttcttcatgggattatctagaaagaccttagcatctattggctaaagtacccatccaaa 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttcatgggattatctaggaagaccttagcatctattggctaaagtacccatccaaa 620
Query: 421 gaatagagaactcttttatcataagaactagacacggtgcattcccaaagcttggcttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatagagaactcttttatcataagaactagacacggtgcattcccaaagcttggcttca 680
Query: 481 actctctgaaccatccccccccccacacacacacagaatgcatacccacatgcacactct 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actctctgaaccattcccccccccacacacacacagaatgcatacccacatgcacactct 740
Query: 541 catgcacacacacattttaaaattataatgtataaacatatcaattaatagctatgattt 600
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 741 catgcacacacacattttaaaataataatgtataaacgtatcaactaatagctatgattt 800
Query: 601 ctgcaacattgtctctattaatgagtctcagctttcttttatataac 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgcaacattgtctctattaatgagtctcagctttcttttatataac 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_g02.g1 MSMg01no180_g02.g1 CHROMAT_FILE:
MSMg01no180_g02.g1 PHD_FILE: MSMg01no180_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:36 2005
(527 letters)
>mm_chr10_35784641_35785572
Length = 932
Score = 576 bits (298), Expect = e-168
Identities = 428/492 (86%), Gaps = 45/492 (9%)
Strand = Plus / Minus
Query: 44 gtttagtatgtcaatctgttattgttttccatatatgaagtctaattgaaatgaaacaat 103
|||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 932 gtttagtatgtcaatctgtttttgttttccatgtaagaagtataattgaaatgaaataat 873
Query: 104 cagagtaattgtaacactaacctacaatttttaatgtatgcattgctatctattgatcta 163
|||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 872 cagagtaattataacacta----agaatttttaatgtatgcattgctatctattgat--- 820
Query: 164 tctacctatctatctatctctctctatctatctatctatctttctatctatctatttacc 223
||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 819 -----ctatctatcta------tctatctatctatctatc---------atctatttatc 780
Query: 224 tatcatctcttcatccacccatccatctatccttccacccatccacccatcca-ttcatg 282
|| | | |||||| | |||||||||||||||||||||||||||||| || ||||||
Sbjct: 779 ---ca-c-c--catccatctatccatctatccttccacccatccacccat-cagttcatg 728
Query: 283 agattctgcaagtgttggatgaggtcatacagttctttatttttagtgtttgtagtcacc 342
|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct: 727 tgattctgcaagtgttggatgaggtcatacagtcctctatttttagtgtttgtagacacc 668
Query: 343 cag------attcaagaaaagcaggaactactatagttctgcttcaatgtagactcttaa 396
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cagactactattcaagaaaggcaggaactactatagttctgcttcaatgtagactcttaa 608
Query: 397 atgtataattcatgttttgctttatttttgaaaacattagtgttgtatttttataagcca 456
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 607 atgtataattcatgttttgctttatttttgaaaacattagtgttgtatttttataagcta 548
Query: 457 tctaatatcctatggt-aaacacctattgttacaaacctgtaaggtttgctacacatttt 515
|| |||||||||| || |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 547 tccaatatcctat-gtcaaacacctattgttacaaacctgtaaggtttgttatacatttt 489
Query: 516 ttttattggagt 527
||| ||||||||
Sbjct: 488 ttt-attggagt 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 932
Length adjustment: 10
Effective length of query: 517
Effective length of database: 922
Effective search space: 476674
Effective search space used: 476674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
