BAC Information

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BAC

Clone NameMSMg01-181I09
Chromosome10 (Build37)
Map Location 26,169,443 - 26,169,953
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
Downstream geneLOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181I09.T7 (MSMg01no181_i09.b1)MSMg01-181I09.TJ (MSMg01no181_i09.g1)
ACCAG374676AG374677
length835714
length of high quality
(start - end)
246 (46 - 291)571 (76 - 646)
definitionCHROMAT_FILE: MSMg01no181_i09.b1 PHD_FILE: MSMg01no181_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:00 2005CHROMAT_FILE: MSMg01no181_i09.g1 PHD_FILE: MSMg01no181_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGAATTTTGT
CAAATGCTTTCTCAGCCTCTAATGAGATGATCATGTGTTTTTTGTCTTTG
AGTTTGTTTATATAGTGGATTACGTTGATGGATTTCCGTATATTAAACAA
TTCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTTT
TGATGTGTTCCTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGCA
TCGATATTCATCACTTATTTTGTTCTGAAGTTCTCTATCTTTGTCGCTTT
TTTATGTGTTTTACCCCCCCCCACTACATAATTTACTCTTCATCCTTATT
TCCTTCCTTTTTTTCTCCCCCCCCCCCCTTTACTTTCCAAATTTTTTTCT
ATTCTTATTTTTTTTTTCTTTACCTTTCTTGCCCTTCCCTTTCTTTTCCT
CCTCTCCTTTCCTACCTTTCTCATTTTCCTTTTCCTCTTTCCTTCATCAT
TTCTCATCTTTCCTTTCCCACTTCCATTCCCCTTCCTTCTTTTCCTCTTC
CCTTTCTTTCCCTTTCTCTCCCCTTTTTCTTCCTCTATCACCTTTCCACC
CTATTTTTTTCTTGCCTCTCCCTATCTTCCCTTTTTATTCTTCTTGTCCT
TTTCTTCCTTTTCTCCCCCCCTTTTCCTTTTCCTTCTTTCCCTCTTTCCT
TCCTTTCCCACTTTTTTACCCTTTTCCCCTTTACCCTTTTTCCCCTTTCT
CTTTCTCTTTCTCCCCCTTGTGTTTTCTCTTCTTC
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGTTCTGTTTTGTGGAATGGA
CATATGTGTCGTAGAGCTTCACAGAAAGGTGGACTTGGCTTGGCATAGTC
GACTAGAGCCTTGGGCTCATCATGAGGTCACACCAGTCCAATTTGCTACA
AATCTACCGTATAAGGACAGTTGCAGATGATTTGCAGTCTCACTAGACTA
GCCATTCTCAATCTCTGGGTCTTGACCCCTTTGGGGATTGCATAAGAGAT
CTCCTGCATATCAGATATTTACATTACAGTTCATAACAGTAGCAAAAATT
AACCATTATGAAATAACAACAAAACAGGCCTGTACCTGGAAGATTCTTGT
CACCCTACTCAGGGCTGTCACACAGTCGTGAGCACATGAGACCTGTATAA
GGATGCATGAACGACGGCTCTGAAGACATCCAAGACTACCCCTTTGCAGA
TTGCACAGAGATATGAATCATTATCCAAGCCTTGTGTGAGAAAGGCTGCT
CCTGAGCAGTGGAGATTTTCTAACTTACTAATTTTTTTTCTTTTCCATTT
TTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCC
CTCATACTCACTTACTCCATTCCCTTATCTTCCCACTCCCTCTTTTTTTT
TCTGGTTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_i09.g1 MSMg01no181_i09.g1 CHROMAT_FILE:
MSMg01no181_i09.g1 PHD_FILE: MSMg01no181_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:00 2005
         (571 letters)



>mm_chr10_26169243_26170213
          Length = 971

 Score =  797 bits (412), Expect = 0.0
 Identities = 487/512 (95%), Gaps = 2/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggagttctgttttgtggaatggacatatgtgtcgtagagcttcacagaaaggtggact 60
           ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct: 201 agggagttctgttttgtggaacggacatgtgtgtcgtagagcttcacagacaggtggact 260

                                                                       
Query: 61  tggcttggcatagtcgactagagccttgggctcatcatgaggtcacaccagtccaatttg 120
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||
Sbjct: 261 tggcttggcatagttgactagagccttgggctcatcatgaggtaacaccagtagaatttg 320

                                                                       
Query: 121 ctacaaatctaccgtataaggacagttgcag-atgatttgcagtctcactagactagcca 179
           |||||||| |||| |||||| |||| || || ||||||||||||||||||||||||||||
Sbjct: 321 ctacaaatttaccatataagaacagctg-aggatgatttgcagtctcactagactagcca 379

                                                                       
Query: 180 ttctcaatctctgggtcttgacccctttggggattgcataagagatctcctgcatatcag 239
           |||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 380 ttctcaatctctgggtcttgacccctttagggattgcatgacagatctcctgcatatcag 439

                                                                       
Query: 240 atatttacattacagttcataacagtagcaaaaattaaccattatgaaataacaacaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atatttacattacagttcataacagtagcaaaaattaaccattatgaaataacaacaaaa 499

                                                                       
Query: 300 caggcctgtacctggaagattcttgtcaccctactcagggctgtcacacagtcgtgagca 359
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggcctgtatctggaagattcttgtcaccctactcagggctgtcacacagtcgtgagca 559

                                                                       
Query: 360 catgagacctgtataaggatgcatgaacgacggctctgaagacatccaagactacccctt 419
           ||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 560 catgatacctgtataaggatgcatgaacgacagctctgaggacatccaaggctacccctt 619

                                                                       
Query: 420 tgcagattgcacagagatatgaatcattatccaagccttgtgtgagaaaggctgctcctg 479
           | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 620 tccagattgcacagagatatgaatcattacccaagccttgtgtgagaaaggctgctcttg 679

                                           
Query: 480 agcagtggagattttctaacttactaattttt 511
           ||||||||||||||||||||||| ||||||||
Sbjct: 680 agcagtggagattttctaacttattaattttt 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)