BAC Information

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BAC

Clone NameMSMg01-181P13
Chromosome10 (Build37)
Map Location 116,434,395 - 116,556,899
singlet/doubletdoublet
Overlap geneBest3, Lrrc10, Cct2, Frs2
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741
Downstream geneYeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181P13.T7 (MSMg01no181_p13.b1)MSMg01-181P13.TJ (MSMg01no181_p13.g1)
ACCAG374985AG374986
length778739
length of high quality
(start - end)
199 (73 - 271)410 (123 - 532)
definitionCHROMAT_FILE: MSMg01no181_p13.b1 PHD_FILE: MSMg01no181_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:35 2005CHROMAT_FILE: MSMg01no181_p13.g1 PHD_FILE: MSMg01no181_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,434,395 - 116,434,590)(116,556,490 - 116,556,899)
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCCTTTGTTTTCAAATGAAACAGTAGAGTTTTTATTATTCTGAGG
AGTAGAAAGACCCCACCGTATGGTCCCAGGAAGATATATCTGATTTGTTA
TCACAGGTTAAAGTTCTCAAATTAATAATAAAAAGCTTGTATTTCTGCTT
ACGCTAGAATTGAACTAAAAGTCAGTCAGTTGTGTTACAAAGCCCCTGAA
GTGGGGGGAGGGGGGAGGTCTCAGTTATTTACCCTGAACACTGTAACAGA
GGCTCTGCTACCATGTCTGTTTTTTCTGACGATGCTCCGTAACCTTCTAG
ACATCTCTTTTATCTTTTCCCCCCCCCCCCCCCCTTGTGATATTTTTTAG
TTTTTATACCTTGCTTTCTTGCCCCAAAAAAAAAAAAAAAATACCTCCTC
CGCCTTTTTTCTTTCTTTACAATATCATCTTATATTCTTATTTTTCTCCT
CTAAACCTCCTATTATTCCCCCTTTTACTTCCCGTCTCTTTTATGCCTTT
GATATTCCTTTTCTTATCACCCTTTTCATTTGCTCTTTATCTTTTATCCT
GTACCCCATATATTTCTCCCCTACTATATTGTTCCCTCTATTTTCACTCC
CCCCCTTTTCCCCCGTTCCCCATAAACCCCCCCTTTCTTTTTTCCCAATT
TCTTACTCTCCATTTTTCATCACTCTCTATAAATCTCTCTGTTTACCTTA
CTTTATTTTCTTTTTTATTTCCTCTTCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTTAAAAGATTTGTCGTAGAGCAT
GAAAGTTCTGTAAGACATGGCCCTGCGCTTCTGCCAGAAACTCAGCATTT
TGAAGACAGATAGCATCCCAGTTCCGAATTGAGATTGGGTACAAAAATAG
CCTAGGGCTGAGAATAGACACAGTAAACGCACCGGCAGAGATCTGTTCAT
GTGGTTATGATGGAAAGGAAATCTTCGTTGTGCTTGTACAGAAAGATATG
CTGTAAACATTGCACGTCGAGCACAGCAGACAAACCCCCGTTTCACGGTT
ATCCTATCTGGTTACTTCTTACTATAGAGCGTGAAGGCTGCTTCTGCCCT
TTTCTCCAGAGTCCTCCTTCTCTCTTCCAGTCACCTGCTGGTTTCAGAAG
TATCTCTTTAAGTTTTCCTTATTTTTATATTTTCTTTAATGTTTTTATAT
GAACACAAAATTTCCCTTAGTACTTTAAGAAATTATAAGACAGCAAAGCT
GTCTTCAGATGTCTTTTGTTTCATCTCAGCACTGTTTGAACTGGTGCAAG
ACATACTTACTCTGTATAGTTTTCTCTTCATGGAGAAGTTACTTTTAGTA
TTAATACACCTGGTTATTATTTCAGACTCTAACATGTTGTCTTGCTTGTA
GCACGAGTTCCAGAAGCCTTGATGGTCACTTCCCTCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_p13.b1 MSMg01no181_p13.b1 CHROMAT_FILE:
MSMg01no181_p13.b1 PHD_FILE: MSMg01no181_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:35 2005
         (199 letters)



>mm_chr10_116434195_116434793
          Length = 599

 Score =  356 bits (184), Expect = e-103
 Identities = 193/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacagtagagtttttattattctgaggagtagaaagaccccaccgtatggtcccaggaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 aaacagtagagtttttattattctgaggagtagaaagaccccaccgcatggtaccaggaa 260

                                                                       
Query: 61  gatatatctgatttgttatcacaggttaaagttctcaaattaataataaaaagcttgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatatctgatttgttatcacaggttaaagttctcaaattaataataaaaagcttgtat 320

                                                                       
Query: 121 ttctgcttacgctagaattgaactaaaagtcagtcagttgtgttacaaagcccctgaagt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgcttacgctagaattgaactagaagtcagtcagttgtgttacaaagcccctgaagt 380

                           
Query: 181 ggggggaggggggagg 196
           ||||||||||||||||
Sbjct: 381 ggggggaggggggagg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no181_p13.g1 MSMg01no181_p13.g1 CHROMAT_FILE:
MSMg01no181_p13.g1 PHD_FILE: MSMg01no181_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:35 2005
         (410 letters)



>mm_chr10_116556290_116557099
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcgcttctgccagaaactcagcattttgaagacagatagcatcccagttccgaattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgcgcttctgccagaaactcagcattttgaagacagatagcatcccagttccgaattga 551

                                                                       
Query: 61  gattgggtacaaaaatagcctagggctgagaatagacacagtaaacgcaccggcagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gattgggtacaaaaatagcctagggctgagaatagacacagtaaacgcaccggcagagat 491

                                                                       
Query: 121 ctgttcatgtggttatgatggaaaggaaatcttcgttgtgcttgtacagaaagatatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgttcatgtggttatgatggaaaggaaatcttcgttgtgcttgtacagaaagatatgct 431

                                                                       
Query: 181 gtaaacattgcacgtcgagcacagcagacaaacccccgtttcacggttatcctatctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtaaacattgcacgtcgagcacagcagacaaacccccgtttcacggttatcctatctggt 371

                                                                       
Query: 241 tacttcttactatagagcgtgaaggctgcttctgcccttttctccagagtcctccttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacttcttactatagagcgtgaaggctgcttctgcccttttctccagagtcctccttctc 311

                                                                       
Query: 301 tcttccagtcacctgctggtttcagaagtatctctttaagttttccttatttttatattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcttccagtcacctgctggtttcagaagtatctctttaagttttccttatttttatattt 251

                                                             
Query: 361 tctttaatgtttttatatgaacacaaaatttcccttagtactttaagaaa 410
           ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 250 tctttaatgtttttatatgaacacaaaatttcctttagtactttaagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)