BAC Information

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BAC

Clone NameMSMg01-182P22
Chromosome10 (Build37)
Map Location 98,105,871 - 98,106,424
singlet/doubletsinglet
Overlap genenone
Upstream geneEpyc, 4921510H08Rik, EG667438
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182P22.T7 (MSMg01no182_p22.b1)MSMg01-182P22.TJ (MSMg01no182_p22.g1)
ACCAG375723AG375724
length746728
length of high quality
(start - end)
553 (65 - 617)318 (41 - 358)
definitionCHROMAT_FILE: MSMg01no182_p22.b1 PHD_FILE: MSMg01no182_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:53 2005CHROMAT_FILE: MSMg01no182_p22.g1 PHD_FILE: MSMg01no182_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAAAGCACTACATTGGGCATCAAAGTATGTATTGTT
GGATTTCATGTACTTATTTTAAACATAGCCCATATCTGAATGAGATAGAA
GAAGGACAAGGCAACAAGCTCCCTTGGGAATAGATTGCTAGCATCTAGGT
TTAAATACAGACCTACCTGGTAACAGAAAGATCATTTCCTGAACAATTAA
CTTTATTTTGCCTTAAAAAAATAATTAACAACTCACCATTAACAACTTTT
AAATAAAAAATGCATTATGCAATATGATTAGCCAGACCCAAAGTCTATAC
ATTTCAATGAACTATACTGTTAGAGCAGCCATTCTGAAGCTGTGTGGAAA
TTCATAGCGCCAATTTACACTTTTACTATGAAATATATGTTTGTGTACCT
ACCCACCCTTACCAAAATCAATGACAGTAAAATCTAGAAAAACAGTTAGC
TTTATATCTTATTTCATGACTTGTGTACCTATTACCTGGATTTTTTACTT
CCTCCTCATCCAATACCCATTCCTGTCCTCTTTTCTTCATGCTATACTGT
ACTCATATGTACATTTATTTACACACACACATGCACAGGCATGCCCTCTT
GGGAGCCCACCCGCACACTAGGATCTTCATATAGGGCAGAACCTGTGTTC
TTTTTGCTTTCCGAGGGTTACAGGGGACCCATCGCACTCTCATGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACCAGACTTTCAAAGAAGAGCTAATGCCAATACTTCTAAAACTATTCCA
TAACATAGAAACAAAAAGAACTTTGCCAAACTCATTCTATGAAGTCACAG
TCACTCAGAACCTAAACTACACCAAGACTCAACAAAGAAATAAAATTTCA
AACCAATTTTTTTAATGAACATTGATGCAAAAAATTGACAATATCAAGAA
AACACCCACAAAGTGAATCCAAGATCACAACAAAGATATTATTCACCATA
ATCAAGTAGGTTTCATTACAGGGATGCACGGGTGGTTCAATATAGGAAAA
TCTATCTTTGATATCCACCACACCCACAAACTGAAAGAAAAGAAAATGAA
TGAGTATCTCATTACATGCCAAAAAAGTGTTTCACAATATCCAAAACCCC
TTCATATTAAAAAGCCATGAAGAGATAACAGATACAAGGCACATACCTAA
ATATAATGCAATAGCCAACATCAAACATAAAACATGTCCACTAAAATTGG
GACTAGACAAGGCTATGTACTCTCCCTGTATATCGCTTCAACATAGTATT
TGAAGTTTTAACTAGACATAAGACAACTAAAGAAGATCAAGGGAATACAA
ATCAGAAAGGAATAAATCCAAGTATCACTATTTGTAAATGATATGGTAGT
ATACATTAAGTGACCACAAAAATTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_p22.b1 MSMg01no182_p22.b1 CHROMAT_FILE:
MSMg01no182_p22.b1 PHD_FILE: MSMg01no182_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:53 2005
         (553 letters)



>mm_chr10_98105671_98106624
          Length = 954

 Score =  926 bits (479), Expect = 0.0
 Identities = 536/555 (96%), Gaps = 3/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagcactacattgggcatcaaagtatgtattgttggatttcatgtacttattttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 taaagcactacattgggcatcaaagtatgtattgttggatttcatgtacttattttaaac 695

                                                                       
Query: 61  atagcccatatctgaatgagatagaagaaggacaaggcaacaagctcccttgggaataga 120
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 694 atagcccatgtctgaatgagatagaagaaggacaaggcaagaagctcccttgggaataga 635

                                                                       
Query: 121 ttgctagcatctaggtttaaatacagacctacctggtaacagaaagatcatttcctgaac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttgctagcat-taggtttaaatacagacctacctggtaacagaaagatcatttcctgaac 576

                                                                       
Query: 181 aattaactttattttgcc-ttaaaaaaataattaacaactcaccattaacaacttttaaa 239
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 575 aattgactttattttgcctttaaaaaaataattaacaactcaccattaacaacttctaaa 516

                                                                       
Query: 240 taaaaaatgcattatgcaatatgattagccagacccaaagtctatacatttcaatgaact 299
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 515 taaaaaatgcattatgcaatatgattagccagacccaaagtctatacgtttcaatgaact 456

                                                                       
Query: 300 atactgttagagcagccattctgaagctgtgtggaaattcatagcgccaatttacacttt 359
           ||||||||||| |||||| ||||||||||||||||||||||||| |  ||||||||||||
Sbjct: 455 atactgttagaacagccactctgaagctgtgtggaaattcatagtggtaatttacacttt 396

                                                                       
Query: 360 tactatgaaatatatgtttgtgtacctacccacccttaccaaaatcaatgacagtaaaat 419
           |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct: 395 tactatgaaatatatgtttgtgcacttacccacccttaccaaaaacaatgacagtaaaat 336

                                                                       
Query: 420 ctagaaaaacagttagctttatatcttatttcatgacttgtgtacctattacctggattt 479
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 335 ctagaaaaacagttagctttatatcttatttcatgactcgtgtacctattacctggattt 276

                                                                       
Query: 480 ttt-acttcctcctcatccaatacccattcctgtcctcttttcttcatgctatactgtac 538
           ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 ttttacttcctcctcatcaaatacccattcctgtcctcttttcttcatgttatactgtac 216

                          
Query: 539 tcatatgtacattta 553
           |||||||||||||||
Sbjct: 215 tcatatgtacattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space:   512592
Effective search space used:   512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)