BAC Information

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BAC

Clone NameMSMg01-183G07
Chromosome10 (Build37)
Map Location 48,570,000 - 48,570,318
singlet/doubletsinglet
Overlap geneLOC100041689
Upstream geneLOC100042398, LOC546562
Downstream geneGrik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G07.T7 (MSMg01no183_g07.b1)MSMg01-183G07.TJ (MSMg01no183_g07.g1)
ACCAG375999AG376000
length749714
length of high quality
(start - end)
316 (43 - 358)381 (76 - 456)
definitionCHROMAT_FILE: MSMg01no183_g07.b1 PHD_FILE: MSMg01no183_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:24 2005CHROMAT_FILE: MSMg01no183_g07.g1 PHD_FILE: MSMg01no183_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCATACCTCTACTATATATGCTTCAGTAAGGGATGTATCCCTTGACA
GGCCAGTGGTATGGGCCATATCCTATACTCATATGGGGAAGAAGGCATGT
TTCTGTTTGTTTCCCCCCCTCCACAGGAAAAAAAATGGGGCATGGTGGTG
GTTGCCAGAAAGGCTAGTGTGACAAATGAAACAATCCCACCTTCCTGCTG
ATTTCCTTAATGATGATGATGACAGTTCTTCCACACAGTGAAGTCAGCTG
GGGCTATATTCCTGACTTACCACTGATACATCCAGTATGGTCTAGACCAG
AGATTCTATTGCTTGCATCTCCCACCACAGAGGAGTCAATTTATAATAAG
ACCGTGAATTTCACCCCCACTTGGTGATGTAATTTCTGTTCACTTGCTAA
AGAATATCATGGGCATATTTCTGTATTTCCTTAATATTCGTATGTCTTAT
CACTTGGTCATGTTGACCCCACTTTTGTCATTTACTATTTTTTTTATCGT
TAGTTTGTATCATTGCTTCTTTTCTTTATCTGTAAAACCCTTTTTTTTTC
CCTTTTTTTTCATTCCCCCCTTTCATTTTTTTCTATATTTTTTTACTTAT
TCCTTTTCGCATACCCACCTCATCTTTATTCCCCCCTTCTTTTAATTTAC
CTCCCTCTTCCTCCTTCCTCACTTTATTTATCCGCTCTCCTTTTTATCN
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTACTAACTCAAAGGTTTCTCCAAT
CAGGGCATCAAGGAGGCAGACATCAGAGCCACAATCCTCTCCATCTATCT
TCTTCCCCAGTTCCATTTTTCCCAGTCTTATTTCCAAAGTTGCCACAGAA
ACCCTGCTGAGGTCTTCCTTCTTCTCTGATCACACCCCAAATGGATCACA
AAGATCCTCTCCTGCAACATTCTTTCTCACAACTCTTCCCAGTAACCCAA
CTTCTAACACCAGCAGGAGTCCCTTGGGAACACATCAGGTGAGCAGGGCC
AGGGAAACAGGTAAGCCCACTGACAATTTTCATCACTCTCTACTCCCCTC
CAAATCTTTTATTTATTTACCTATTTATTTATTTATTTATTTATTTATTT
ATTTATTCACTCCCCTACCCCTTCTCCATTTCTCCCTCAAATTTAAACTT
CTATCCAATATTTTTCGTTTTATATTATTTCTTATCTTCTCATCTTTTCT
CTTTTTATATATTTACTAAATATTTCTTCTTACATAATTATTTTATAATA
TTATACACTCTATATACCCTTTCCTGTATGATTTCATTAGATGTAAAAAC
TATGTCTCTTAGGTTTGTCGTATACTATCATTTGTATTTATGTTTATATT
TATAATTTTCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g07.b1 MSMg01no183_g07.b1 CHROMAT_FILE:
MSMg01no183_g07.b1 PHD_FILE: MSMg01no183_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:24 2005
         (316 letters)



>mm_chr10_48569797_48570518
          Length = 722

 Score =  551 bits (285), Expect = e-161
 Identities = 308/323 (95%), Gaps = 14/323 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccatacctctactatatatgcttcagtaagggatgtatcccttgacaggcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccatacctctactatatatgcttcagtaagggatgtatcccttgacaggcca 263

                                                                       
Query: 64  gtggtatgggccatatcctatactcatatggggaagaaggcatgtttctgtttg------ 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 264 gtggtatgggccatatcctatactcatatggggaagaaggcatgtttctgtttgtttttt 323

                                                                       
Query: 118 -tttccccccctccacaggaaaaaaaatggggcatggtggtggttgccagaaaggctagt 176
            |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcccc----ccacaggaaaaaaaatggggcatggtggtggttgccagaaaggctagt 379

                                                                       
Query: 177 gtgacaaatgaaacaatcccaccttcctgctgatttccttaatgatgatgatgacagttc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgacaaatgaaacaatcccaccttcctgctgatttccttaatgatgatgatgacagttc 439

                                                                       
Query: 237 ttccacacagtgaagtcagctggggctatattcctgacttaccactgatacatccagta- 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 440 ttccacacagtgaagtcagctggggctatattcctgacttaccactgatacatccagcag 499

                                  
Query: 296 --tggtctagaccagagattcta 316
             |||||||||||||||||||||
Sbjct: 500 tgtggtctagaccagagattcta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 722
Length adjustment: 9
Effective length of query: 307
Effective length of database: 713
Effective search space:   218891
Effective search space used:   218891
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)