BAC Information

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BAC

Clone NameMSMg01-183K11
Chromosome10 (Build37)
Map Location 91,339,947 - 91,458,292
singlet/doubletdoublet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183K11.T7 (MSMg01no183_k11.b1)MSMg01-183K11.TJ (MSMg01no183_k11.g1)
ACCAG376179AG376180
length770750
length of high quality
(start - end)		311 (42 - 352)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no183_k11.b1 PHD_FILE: MSMg01no183_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:43 2005CHROMAT_FILE: MSMg01no183_k11.g1 PHD_FILE: MSMg01no183_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,457,985 - 91,458,292)(91,339,947 - 91,340,232)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTCTTTACCGTCCCTCCATAGCTCTCAGAATATGAATGTTTGGAAGT
CAAACTCAAACCATATCTAACAAGAAAGGGTAAAAGAAATACAAAGTGAC
TGAAGACAGTGCTTTGGTTTGTAATTTAAAGAGCAATGATTGGTTATGAC
ATTGAACAACATGCTCTCGGCACCAGCTTCTTCTTCATTTCAAGTGTTGG
GAAGCTTTGATCACTAGTTTTATGTGTCAGCTCGCCTGGTCTATGGGATG
ACCAGGTATTTGTTTATGCTTCAACTATAGTGGGAATGGGAGGCAGGAGA
TGCATGTTCTGTTTAACCCCCCCTGCCCGAATCTTCTTGTTTCTGTTTCT
TTATCATTCCCCCCCCCGTTTTTTATTATTTTTCCCTCTCTCGCCTACCA
CTTTTGTTCCTCCCCCTCCCCTTCTTTTTTCTTGCCTACTTACCGTTTAT
CTTTCCCCATAAATCACTTTTTCCCCCCCAATTTACTCCTTATTATCCTC
TTTCTTCCTTTCTTCTATTTTTCCCTTCCCCTCCTTTTCATCTCTCCTCC
CACTCCTTCTTTTCCCCACTCTCTTCTCTCTCCCCCCCCCTTCATATCCT
ACTATTTATCCTCATTACTTGTCCCTTTTCTCTTTTCTCATCCCCTTTTT
TTCCCCCCTTCTTTATATTTTACCTCATCTCAGGCTTATCCCGCGTTTTT
ATCCCTTTTCTATTTTTTTC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCTAAAAAGAAGAAGGAGGCCCTAGAAGGG
AAGGGAGAGAAGAGAATCCGATTTGACCTCTTCATCGTGCTGCATGAAAT
GCCTCCTGAAAATGTAAATGAGGTTGGGTAGAAACTGCCTTCATGTCTCC
CATTTTTGACTTCAGAGTCTCAGCAACATGACTACCTAAATATGAGCTGA
ACAAGGACAACAGGACAACAATAGACACACTAACAAGGACAGTGTGTTAG
GGGAGAACCCAGGGGGCCTCAACCCTACACAGAACAAACAAAAACAACCA
AATTATTTTTTCTCACACCCCCGCCCAATCATCCTTCCTTAGGGATGAGC
ACACTTACTGCCCACCCAAATACATGAGAAGAACATCATGTAGACTGAGC
AGGCTACATTTATGCATTTAGGGATACATATTAATGAAAAAAAGAGGTGA
TGAAGTTACCAAAACTAAAGGAGAGGTGTATGTGAGCTTTTTCTTCTTAC
CCTTCTTCTCTTTTTTTTCTCCTTTTTTTTATCATAATTCTATTCATATT
ATTTTTTTTTCAATTTTTTTATCTATTCCTTACTACTCATTATCCACTAT
ACTTTTTTTATTCATTGTAATATTCCACAATCTTCACATCTTACACATTA
TATAATAACCCTCTTTTCGATCTGCTATTTTTTTACTTATTAACTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_k11.b1 MSMg01no183_k11.b1 CHROMAT_FILE:
MSMg01no183_k11.b1 PHD_FILE: MSMg01no183_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:43 2005
         (311 letters)



>mm_chr10_91457877_91458587
          Length = 711

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacttctttaccgtccctccatagctctcagaatatgaatgtttggaagtcaaa 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggaattcacttctttaaggtccctccatagctctcagaatatgaatgtttggaagtcaaa 357

                                                                       
Query: 64  ctcaaaccatatctaacaagaaagggtaaaagaaatacaaagtgactgaagacagtgctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctcaaaccatatctaacaagaaagggtaaaagaaatacaaagtgactgaagacagtgctt 297

                                                                       
Query: 124 tggtttgtaatttaaagagcaatgattggttatgacattgaacaacatgctctcggcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tggtttgtaatttaaagagcaatgattggttatgacattgaacaacatgctctcggcacc 237

                                                                       
Query: 184 agcttcttcttcatttcaagtgttgggaagctttgatcactagttttatgtgtcagctcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 agcttcttcttcatttcaagtgttgggaagctttgatcactagttttatgtgtcagctcg 177

                                                                       
Query: 244 cctggtctatgggatgaccaggtatttgtttatgcttcaactatagtgggaatgggaggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cctggtctatgggatgaccaggtatttgtttatgcttcaactatagtgggaatgggaggc 117

                   
Query: 304 aggagatg 311
           ||||||||
Sbjct: 116 aggagatg 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_k11.g1 MSMg01no183_k11.g1 CHROMAT_FILE:
MSMg01no183_k11.g1 PHD_FILE: MSMg01no183_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:44 2005
         (286 letters)



>mm_chr10_91339747_91340432
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctaaaaagaagaaggaggccctagaagggaagggagagaagagaatccgatttgacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctaaaaagaagaaggaggccctagaagggaagggagagaagagaatccgatttgacct 260

                                                                       
Query: 61  cttcatcgtgctgcatgaaatgcctcctgaaaatgtaaatgaggttgggtagaaactgcc 120
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cttcatcgtgctgcgtgaaatgcctcctgaaaatataaatgaggttgggtagaaactgcc 320

                                                                       
Query: 121 ttcatgtctcccatttttgacttcagagtctcagcaacatgactacctaaatatgagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgtctcccatttttgacttcagagtctcagcaacatgactacctaaatatgagctg 380

                                                                       
Query: 181 aacaaggacaacaggacaacaatagacacactaacaaggacagtgtgttaggggagaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaggacaacaggacaacaatagacacactaacaaggacagtgtgttaggggagaacc 440

                                                         
Query: 241 cagggggcctcaaccctacacagaacaaacaaaaacaaccaaatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggggcctcaaccctacacagaacaaacaaaaacaaccaaatta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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