BAC Information

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BAC

Clone NameMSMg01-184D24
Chromosome10 (Build37)
Map Location 112,718,522 - 112,718,836
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D24.T7 (MSMg01no184_d24.b1)MSMg01-184D24.TJ (MSMg01no184_d24.g1)
ACCAG376593AG376594
length758737
length of high quality
(start - end)
319 (56 - 374)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no184_d24.b1 PHD_FILE: MSMg01no184_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:32 2005CHROMAT_FILE: MSMg01no184_d24.g1 PHD_FILE: MSMg01no184_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCACCTTCCATTTGCATAGGAAGTGGAATCTACACA
GAGAACATATCTGTACGCATCTGTACAGGCAACATCACATTATTAAGCTA
TTTACATGTTCTATGAAAGACATGATCAAGAGTTGTGTTGTTTAACATAT
TTGATTGTTTTGTTGCTCATCAAAATTTAGCTTTGGGTATATGGAGAATT
GATAATATTTGGGGGGAATCGATGTAAAGAGTGACCTGATCAGCCTTATT
ATTTCCTTATTTATCTTTGTTAGCACTATGGAGTCAAATATTCCTATGAT
CTTCTTTTTTTATAATCCGTGACTGTATCTATGCCCCCCCCCCCTACAAT
GTTACACTAGGATCTTTCTAAATAACTTCTCTGTCTTTACTACATTGACT
TATCTTTTTGAGCATGCCCATATCTACCAGTCCAAGCTGTATGTCTCTGT
CCTTTCAATTTCCTGTCTACACATGAAAAAATTCACTTATCTCTGTAAAT
CAAAGTAATTAAAACACTGGATGTTTATCAAGATATGGGCAATGCTATTA
AATTGGTGAGTCCCTTTCAAATGACAAATTCAAAACAAGATAGTTTCTTT
TTTTTTTTTCTTAAGAAATCTTGAATTCCCTTGAGGGAACGCCAGGGCCA
ATAAATGGTATTGGGTGGGTTAACAAGAGGTAAATTTTTGGAATATATTT
TAATATTA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCATAAAAACCCTGAGATTCGACGTCACACCTGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGTATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAGCCACTCTCGAA
ATCATTCTGGCGGTTCCTTAGAAAATTCGACATAGTACTACTGGAGGATC
CCGCAATACCACTCCTGTTTTTTACCCCCACCCCCGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATTTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGGTTGGACCTGCAGGGCATCATCCTGAGTGAGGTAACACAAT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAATGCATGAAA
CTCAAGAAGAAGAAAGATCAAGGTGTGGACACTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d24.b1 MSMg01no184_d24.b1 CHROMAT_FILE:
MSMg01no184_d24.b1 PHD_FILE: MSMg01no184_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:32 2005
         (319 letters)



>mm_chr10_112718318_112719036
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccttccatttgcataggaagtggaatctacacagagaacatatctgtacgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccaccttccatttgcataggaagtggaatctacacagagaacatatctgtacgca 460

                                                                       
Query: 65  tctgtacaggcaacatcacattattaagctatttacatgttctatgaaagacatgatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tctgtacaggcaacatcacattattaagctatttacatgttctatgaaagacatgatcaa 400

                                                                       
Query: 125 gagttgtgttgtttaacatatttgattgttttgttgctcatcaaaatttagctttgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gagttgtgttgtttaacatatttgattgttttgttgctcatcaaaatttagctttgggta 340

                                                                       
Query: 185 tatggagaattgataatatttggggggaatcgatgtaaagagtgacctgatcagccttat 244
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 339 tatggagaattgataacatttggggggaattgatgtaaagagtgacctgatcagccttat 280

                                                                       
Query: 245 tatttccttatttatctttgttagcactatggagtcaaatattcctatgatcttcttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 279 tatttccttatttatctttgttagcactatggagtcaaatattcctacgatcttcttttt 220

                          
Query: 305 ttataatccgtgact 319
           |||||||||||||||
Sbjct: 219 ttataatccgtgact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)